Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g04015 ATGATTTCGTTGAACATTGCCAATTTAATGGGACACAGGTGCTCAAAAAACTTGGGAATTTCTAGCTGGTGTGACGGTGATAAGAGGAAAATATCAGAGAAAGTTGTGTTGCGTGTGAACTCGAAGGTTCGTCAACATAATAATATCCATAACACTGGTAAAGAAGAAGAGGGAGAAGAGAAGAAAGTGATTGACTCTGACTCTGAGTATCTATCTGATGTGAATTTGTGGTTTCTGAGTTTTGGAGCAATTTGTTTTACATGCAGTGGTTGGTCTTTGCTAAGGGATCCACAGTACAACAAAGGGCTAGCTTTCAGTGAGAAAGAGAGGGATGCACACTATTTGCGTGGACTTCTACCTCCCACTGTCCTCACTCAGTTACTTCAGGAGAAGAAACTGATGCACAACATCAGGCAATATAAGGTTCCCTTGCAAAAGTACGTGGCCATGATGGAACTTCAGGCAAGAATTTCAACTGAAAAGAAGGGCAGTATATCATCGCAAATACACGATGCCCTTGAATTTTGCAAGAACATAGAAAATGAGAGGAATGAAAGGCTGTTTTACAAACTTCTCATTGACAATGTTGAGGAATTGCTCCCAGTTGTATATACTCCTATTGTTGGTGAGGCTTGGCAGAAATATGGGAGCATATTCAGGCGTCCTCAGGGTCTTTACATTAGTTTGAAAGAAAAGGGTAAAGTCCTTGAGGTTTTGAAAAACTGGCCTGAGAGGAATATTCAAGTTATTGTTGTAACTGATGGTGAGCGAATTTTGGGACTTGGGGATCTTGGATGTCAGGGGATGGGGATTCCTGTTGGTAAATTGGCTTTGTACACTGCACTAGGAGGAGTTCGTCCTTCAGCTGTAAAGGATTTTCCATTATTTTGTTTGCCTGTCACTATCGATGTGGGGACAAATAATGAGACATTACTGAAGGATGAATTTTACATTGGGCTTAGACAAAAAAGGGCAACTGGGCAGGAATATTATGACCTTCTGGATGAGTTCATGACTGCTGTGAAGAAAAATTACGGAGAAAAAGTTCTTGTACAGTTTGAAGACTTTGCAAATCACAATGCTTTTGAGTTGCTTGCTAAATATGGTACAACACATCTTGTTTTCAACGACGATATACAGGGGACTGCATCTGTTGTTCTAGCTGGTGTTGTAGCAGCCCTGAAGCTCATTGGTGGGACCTTACCTGAGCACAAATTCCTCTTTCTCGGTGCTGGAGAAGCTGGAACTGGTATAGCAGAGTTAATAGCTCTTGAGATGTCGAAGCAGACTAAGGCACCCATAGAAGAGAGTCGCAAGAAGATATGGCTTGTAGACTCAAAGGGTTTAATTGTTAGTTCCCGGAAGAATTCACTTCAACACTTCAAGAAGCCCTGGGCTCATGAACATGAGCCAGTCAACAGTCTCCTAGAAGCCGTCAAGGTGATCAAGCCTACAGTTTTGATTGGATCCTCTGGTGTGGGAAAAACATTTACAAAGGAAGTGGTTGAGGCTATGACTTCAAACAATGATAAACCTCTCATTTTGGCTCTCTCCAATCCTACCTCACAGTCTGAGTGTACTGCCGAAGAGGCTTACCAGTGGAGTGAGGGTCGTGCAATTTTCGCCAGTGGTAGTCCATTTGATCCTGTTGAATACAAGGGCAAAGTTTACGCTTCTGGACAGGCCAACAATGCTTACATTTTCCCAGGCTTTGGTTTGGGTTTAGTAATCTCAGGAGCTATTCGAGTACATGATGATATGCTTCTAGCAGCTTCTGAAGCCTTGGCAACACAAGTGAGCGAGGAGAACTACAAAAATGGTTTGATTTACCCACCATTCTCTAATATCAGAAAAATCTCAGCCAATATAGCTGCAAATGTTGCTGCCAAGGCCTACGAACTAGGCTTGGCCACTCGTCTTCCACGACCTCAGGATCTTGTGAAGTATGCTGAGAGTTGCATGTATACCCCTGTATATCGCAATTATAGGTGA 1992 0.4262 MISLNIANLMGHRCSKNLGISSWCDGDKRKISEKVVLRVNSKVRQHNNIHNTGKEEEGEEKKVIDSDSEYLSDVNLWFLSFGAICFTCSGWSLLRDPQYNKGLAFSEKERDAHYLRGLLPPTVLTQLLQEKKLMHNIRQYKVPLQKYVAMMELQARISTEKKGSISSQIHDALEFCKNIENERNERLFYKLLIDNVEELLPVVYTPIVGEAWQKYGSIFRRPQGLYISLKEKGKVLEVLKNWPERNIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGVRPSAVKDFPLFCLPVTIDVGTNNETLLKDEFYIGLRQKRATGQEYYDLLDEFMTAVKKNYGEKVLVQFEDFANHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLPEHKFLFLGAGEAGTGIAELIALEMSKQTKAPIEESRKKIWLVDSKGLIVSSRKNSLQHFKKPWAHEHEPVNSLLEAVKVIKPTVLIGSSGVGKTFTKEVVEAMTSNNDKPLILALSNPTSQSECTAEEAYQWSEGRAIFASGSPFDPVEYKGKVYASGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALATQVSEENYKNGLIYPPFSNIRKISANIAANVAAKAYELGLATRLPRPQDLVKYAESCMYTPVYRNYR 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g04015 663 Gene3D - 377 663 - -
Vian1g04015 663 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 76 378 IPR046346 -
Vian1g04015 663 FunFam Malic enzyme 377 663 - -
Vian1g04015 663 FunFam NADP-dependent malic enzyme 1 179 373 - -
Vian1g04015 663 Pfam Malic enzyme, N-terminal domain 182 368 IPR012301 GO:0004471
Vian1g04015 663 PRINTS Malic enzyme signature 350 368 IPR001891 GO:0004470|GO:0004471
Vian1g04015 663 PRINTS Malic enzyme signature 187 211 IPR001891 GO:0004470|GO:0004471
Vian1g04015 663 PRINTS Malic enzyme signature 406 422 IPR001891 GO:0004470|GO:0004471
Vian1g04015 663 PRINTS Malic enzyme signature 247 276 IPR001891 GO:0004470|GO:0004471
Vian1g04015 663 PRINTS Malic enzyme signature 509 525 IPR001891 GO:0004470|GO:0004471
Vian1g04015 663 PRINTS Malic enzyme signature 375 391 IPR001891 GO:0004470|GO:0004471
Vian1g04015 663 PANTHER MALIC ENZYME-RELATED 181 662 - -
Vian1g04015 663 Gene3D - 88 376 IPR037062 GO:0004471
Vian1g04015 663 SMART Malic_M_2 379 632 IPR012302 GO:0051287
Vian1g04015 663 CDD NAD_bind_1_malic_enz 379 657 - -
Vian1g04015 663 SMART malic_2 181 369 IPR012301 GO:0004471
Vian1g04015 663 Pfam Malic enzyme, NAD binding domain 379 631 IPR012302 GO:0051287
Vian1g04015 663 ProSitePatterns Malic enzymes signature. 375 391 IPR015884 GO:0004471
Vian1g04015 663 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 379 662 IPR036291 -
Vian1g04015 663 PIRSF ME 161 663 IPR001891 GO:0004470|GO:0004471
Vian1g04015 663 PIRSF ME 44 177 IPR001891 GO:0004470|GO:0004471
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g04015 Vian-Chr1 63227338 63231900 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g04015 K00029 - gmx:100782096 990.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g04015 1 63227338 63231900 Vian9g00197 9 1613103 1617973 ECH
Vian1g04015 1 63227338 63231900 Vian11g00194 11 1755639 1760479 ECH
Vian1g04015 1 63227338 63231900 Vian4g01790 4 34165389 34169466 ECH
Vian1g04015 1 63227338 63231900 Vian1g04015 1 63227338 63231900 ECH
Vian1g04015 1 63227338 63231900 Vian8g01601 8 35536141 35540945 PCT