Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g04014 ATGGGTCGTCGTAAGATTGATATCGCAGAGGTGAAGGATCCCAACAGCAAGCAAGTTACATTCTCCAAGCGCCGCTCAGGTTTGTTCAAAAAGGCATACGAATTGTCTGTAATGTGCGGTGTAGAACTTGCTATTGTTATGTTCTCTCCTGGGAAAAAGCCTCACTCTTTTGGCCACCCAAGTGTTAATGCTGTTGCAGACAAATTTCTTCGGAAGAAGCGAACGTCAAATGTTGTCAGAGCAAATTATGTACGAGAAAATGACGCACCTAATGAAGTTGATGGCATGGAGAGGTTAAGCCAACAGTTATTTTCCGTTGAAGTTCACATAAACGAGGAACACGAGAAGGCAACGGAACTTGACAGGAGAGAGAAAGAACAAGAAGCTTCACAAGCCCAAAACAAAGAATTGCAAAATTCACCAGTGCTCCAGCGTATGGTGGAAGATTATGTTGATGCGATGGAGGTCTCAGAGTGTATGTTGCTTCTGGCAAAAGAACCTGTAATTGGAATATCAAATCGTGCAATTACCAAGAGAAGAAGAAGAAGAAGGAATTGA 558 0.4265 MGRRKIDIAEVKDPNSKQVTFSKRRSGLFKKAYELSVMCGVELAIVMFSPGKKPHSFGHPSVNAVADKFLRKKRTSNVVRANYVRENDAPNEVDGMERLSQQLFSVEVHINEEHEKATELDRREKEQEASQAQNKELQNSPVLQRMVEDYVDAMEVSECMLLLAKEPVIGISNRAITKRRRRRRN 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g04014 185 FunFam Agamous-like MADS-box protein AGL62 13 78 - -
Vian1g04014 185 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vian1g04014 185 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vian1g04014 185 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vian1g04014 185 Coils Coil 115 140 - -
Vian1g04014 185 MobiDBLite consensus disorder prediction 114 140 - -
Vian1g04014 185 SUPERFAMILY SRF-like 1 75 IPR036879 GO:0003677|GO:0046983
Vian1g04014 185 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vian1g04014 185 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Vian1g04014 185 MobiDBLite consensus disorder prediction 114 131 - -
Vian1g04014 185 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vian1g04014 185 PANTHER MADS BOX PROTEIN 3 138 - -
Vian1g04014 185 Gene3D - 14 83 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g04014 Vian-Chr1 63225398 63225955 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g04014 1 165 Type I MADS-box Gene Family AT2G34440 35.955 2.57e-30 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vian1g04014 SRF-TF 1e-22 No_clan