Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g04011 ATGGGTCGTCGTAAAATTGAAATTGCAGCAGTGAAGGATCCTAATACGAGACAAGTCACATTTTCAAAGCGTCGAACAGGTTTATTCAAAAAGGCGAATGAACTATCGATACTGTGCGGTGCAGAAATTGCAATTGTCGTGTTCTCTATTGGAAACAGACCTTACTCTTTTGGGCACCCAGGTGTCGATGCTGTTGCAGCCAAATTTCTTGAACATGAAATCGTCAAATCAAATGATGTCGAACAAAACAACGTAGAAGTTGGTGACATTGGTAGGTTGAATCAACAACTGTTAGATATTGAAGCCCGAATACTTGTGGAGGAAAAGAAGGGCTTAGAGCTTGATCAGATACTAAAACAGCACCAACTGTCACAGCCTTCCCAATTTAAACAATTACAAGATTCATATTTAGAATTCCAACGTAGGCTGAAAGATTACACTGATGCGATTGAGGTATCAGAATGTTTGATTCTACTTGCACAAGAACCCGTTGTCCAAATAACAAAACAGGTGAAGAAAAGAAGAAAGAATTGA 534 0.3914 MGRRKIEIAAVKDPNTRQVTFSKRRTGLFKKANELSILCGAEIAIVVFSIGNRPYSFGHPGVDAVAAKFLEHEIVKSNDVEQNNVEVGDIGRLNQQLLDIEARILVEEKKGLELDQILKQHQLSQPSQFKQLQDSYLEFQRRLKDYTDAIEVSECLILLAQEPVVQITKQVKKRRKN 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g04011 177 PANTHER MADS BOX PROTEIN 3 135 - -
Vian1g04011 177 Coils Coil 129 149 - -
Vian1g04011 177 FunFam Agamous-like MADS-box protein AGL62 13 79 - -
Vian1g04011 177 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vian1g04011 177 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vian1g04011 177 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vian1g04011 177 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vian1g04011 177 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vian1g04011 177 SUPERFAMILY SRF-like 1 74 IPR036879 GO:0003677|GO:0046983
Vian1g04011 177 Gene3D - 14 84 IPR036879 GO:0003677|GO:0046983
Vian1g04011 177 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g04011 Vian-Chr1 63212602 63213135 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g04011 1 161 Type I MADS-box Gene Family AT2G34440 39.655 4.19e-33 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vian1g04011 SRF-TF 2.5e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g04011 - - gmx:100791127 253.062