Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g04010 ATGGAGGAGGACGACCTACTCGAACGACTCGACTTGGAGTTCGCGTCCACCAGTTCTGGCTCCGTCATTTCCTCCACACTCAGAACCGAAGATTTCCGGAACCTCAACAGCTCCGGCGACATTTCCTCCATCAGTAGTGGCTCCGGCGAGATTCCTCCTTCCGCAGTCACCGAGGCGGTACTCTCGCCGCCTCCGCTGCATCGCGCGGGGCTCAGTGACTGCGAGACACCGGCGGTGAGGGAGAAGTGCATCGGAAGGAGTAACAAGGGAGTGAGTTGGGGTCACACTTCAGTGATTGGAAGAAGGAAAGAGATGGAGGACGCTGTGGCAGTTATTCCCGGATTCATGTCTCGCACGTGCGATCACTTCGGCGGTTGTACCGCTCCCGGCTCCAGATCCTCCGGCGAGATCTCTCCCGTTCATTTCTTCGGCGTTTACGACGGCCATGGTGGCTCACAGAATTATGATATCAAAGATGGATTAAGAAGGGCAACTGAATCTGAACGTCCTTCTCCTTGTACAAGGGAGGAGAAATACCTGTCCAAACTGCGAAGCCTGGAGCTCATTGTGGCTAAGTTCTGTGCTAAGCGGATGCACGATGTTATAGCAGAGGAGTGGAACCGAGAAATGGCAGGTGGGGCTGAGTGGCAGAGAAGATGGGAAACCGTATTTGCTAACAGTTTTGAGAGGACTGACAATGAAATCCTATCGGACGAAGTTGCACCTGAAATGGTAGGATCTACTGCATCTGTGGTGGTTCTAACTGGTTGCCAAATTATTGCATCCAACTGCGGCGACTCAAGGGTAGTTCTTTGCCGCAGGACACAAACTATCCCCTTGTCAGTGGATCAAAAGCCGGATAGACAAGATGAACTCTTGAGAATTGAAGGAGAAGGAGGAAAAGTCATAAACTGGAATGGAGCTAGGGTGTTTGGTGTTCTTGCCATGTCCAGGGCCATAGCATCTAGTGCAAAATTTGGGTTTGTTCTTTTCTTTTGGGGCTATTCAGTTACAGAAACTATATGGACAGTCTTCCAAATTGAGCTAGTATTTGGACATCTTGAAAACAAGTCTATGACTTGTCCTGTATCTGACCTGCTTAACGATGATGTTTCAGGTGATCGGTATTTGAGACCATGGATTATTCCCGTGCCTGAGATAACTTTCACAGCTAGGACAGACGAGGATGAGTGCTTAATTTTGGCAAGCGACGGACTCTGGGATGTAATGAGCAATGAAGAGGTTGGAGAAGTGGCACGCCACATTCTTAGAAGACGACGCAGATCCTTGTCAGTGGAGGAACCGTCTCCTGCACAAGCTGTTGCCGACAGCCTGACTGAAATTGCATATGGTAGAAATAGTAAAGATAACATTTCAATCATAGTTGTTGATCTGAAATCCAAGAGAAAACGTCAGCAAAGGCCTGCTTTAATTTCCTAA 1440 0.4896 MEEDDLLERLDLEFASTSSGSVISSTLRTEDFRNLNSSGDISSISSGSGEIPPSAVTEAVLSPPPLHRAGLSDCETPAVREKCIGRSNKGVSWGHTSVIGRRKEMEDAVAVIPGFMSRTCDHFGGCTAPGSRSSGEISPVHFFGVYDGHGGSQNYDIKDGLRRATESERPSPCTREEKYLSKLRSLELIVAKFCAKRMHDVIAEEWNREMAGGAEWQRRWETVFANSFERTDNEILSDEVAPEMVGSTASVVVLTGCQIIASNCGDSRVVLCRRTQTIPLSVDQKPDRQDELLRIEGEGGKVINWNGARVFGVLAMSRAIASSAKFGFVLFFWGYSVTETIWTVFQIELVFGHLENKSMTCPVSDLLNDDVSGDRYLRPWIIPVPEITFTARTDEDECLILASDGLWDVMSNEEVGEVARHILRRRRRSLSVEEPSPAQAVADSLTEIAYGRNSKDNISIIVVDLKSKRKRQQRPALIS 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g04010 479 CDD PP2Cc 94 465 IPR001932 -
Vian1g04010 479 PANTHER PROTEIN PHOSPHATASE 78 465 IPR015655 GO:0004722|GO:0006470
Vian1g04010 479 SUPERFAMILY PP2C-like 190 466 IPR036457 -
Vian1g04010 479 ProSitePatterns PPM-type phosphatase domain signature. 142 150 IPR000222 GO:0043169
Vian1g04010 479 SUPERFAMILY PP2C-like 80 154 IPR036457 -
Vian1g04010 479 Gene3D - 82 476 IPR036457 -
Vian1g04010 479 ProSiteProfiles PPM-type phosphatase domain profile. 92 465 IPR001932 -
Vian1g04010 479 SMART PP2C_4 82 463 IPR001932 -
Vian1g04010 479 Pfam Protein phosphatase 2C 190 458 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g04010 Vian-Chr1 63187382 63197099 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g04010 93 475 PP2C-type Phosphatase Gene Family AT4G26080 40.199 1.03e-82 260
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g04010 K14497 - gmx:100782634 606.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g04010 1 63187382 63197099 Vian1g04010 1 63187382 63197099 ECH