Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g04004 ATGTTTTATTTATTGTGTCTTGAAAAAACTGTCTGTGATTTTTTTAAGGTAGGCTTCCCAGTAGGACTATTCAAAGGCCCCAGTAACATTTTCCTCAGGCACCCAATGGAGAGAACCATTAGGTGGTTGAAGGGATTGTTTGGGATAAAGACAGACAGAGCGCGCAAAGAAAATTCAAATCCTGGCTCCAAATGGTGTCACTCAGACAGAGATTCCAGAGGTTTATGTCATAATCCTACCACCATTCCTCCCAATATTTCACCTGCTGAAGCTGCTTGGCTACAATCCTTCTACTCAGAAACTGAGAAGGAGCAGAACAAGCATGCCATTGCAGTTGCGGTGGCCACTGCAGCAGCGGCTAATGCGGCGGTGGCTGCTGCTCAGGCTGCTGTAGCAGTGGTTAGGTTAACCAGCCATGACAATGGCAGAGACACTATGTTTGATGGTGGACAAGAAAAGTTGGCTGTTGTCAAGATTCAAACTGTGTTTAGAGGATACTTGGCAAGGAAGGCATTGAGAGCTTTAAAAGGATTGGTGAAGTTGCAAGCACTAGTGAGAGGGTACTTAGTGCGGAAGCAAGCGGCAGCAACCCTACTCAGCATGCAGGCTCTAATTAGAGCTCAAGCTACAGTAAGATCTAAGAAATCTCAGGGACTCATGAGCACAAAGAATGAAGCACACAGGTTTCAAACACAAGCACGAAAATCCATGGAGAGATTTGAAGACATACAGAGTGAGTACATAGCTCCCATCCACAGCAGAAGGCTGTCATCTTCCTTTGATGCCACAATGAATAATGCAAACAACAGTGTTGATGGGAGCCCCAAAATAGTTGAAGTGGACACTGGTAGGCCAAAGTCAAGGTCTCGCAGGAGCAACACATCAATGTCAGATTTTGGTGATGACCCATCATTTCAAACACTTCCTTCTTCTCTCCCATTCACTCATTTATCCATACCGAACCACAGGACTTTTCTGGACTCAGAGTGGGGCTTAACAGGAGAAGAGTGCAGATTTTCAACAGCACAAAGCACTCCACGCTTCACCACCAACTCTTGTAGTTGTGGCTCTCTTGTTGTTGCCCCTATGACACCTAAAAGTGTTTGCAACGAAAACTTCTTCTATGGGCAGTACCACAATTTTCCAAACTACATGGCCAGCACTCAGTCTTTCAAGGCTAAATTGAGGTCTCATAGTGCTCCGAAGCAGCGTCCAGATCCTGGTTCAAAGAAGAGACTTACCCTCGATGAGATGATGGAGTCCAGGAGCATTTTAAGTGGTACTAGAATGCAAAGGTCTTGCTCACAGATTCAGGAAGCAATTAATTTTAAGAATGCTGTGATGAGTAAGCTTCAGAAATCCACAGAATTTGGTAGGGAGACAACACCAACTTTTCCAACCAGAGGAGGTGGCGATTGGTGA 1422 0.4515 MFYLLCLEKTVCDFFKVGFPVGLFKGPSNIFLRHPMERTIRWLKGLFGIKTDRARKENSNPGSKWCHSDRDSRGLCHNPTTIPPNISPAEAAWLQSFYSETEKEQNKHAIAVAVATAAAANAAVAAAQAAVAVVRLTSHDNGRDTMFDGGQEKLAVVKIQTVFRGYLARKALRALKGLVKLQALVRGYLVRKQAAATLLSMQALIRAQATVRSKKSQGLMSTKNEAHRFQTQARKSMERFEDIQSEYIAPIHSRRLSSSFDATMNNANNSVDGSPKIVEVDTGRPKSRSRRSNTSMSDFGDDPSFQTLPSSLPFTHLSIPNHRTFLDSEWGLTGEECRFSTAQSTPRFTTNSCSCGSLVVAPMTPKSVCNENFFYGQYHNFPNYMASTQSFKAKLRSHSAPKQRPDPGSKKRLTLDEMMESRSILSGTRMQRSCSQIQEAINFKNAVMSKLQKSTEFGRETTPTFPTRGGGDW 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g04004 473 Pfam Protein of unknown function (DUF4005) 346 429 IPR025064 -
Vian1g04004 473 ProSiteProfiles IQ motif profile. 176 203 IPR000048 GO:0005515
Vian1g04004 473 Gene3D - 150 198 - -
Vian1g04004 473 ProSiteProfiles IQ motif profile. 152 180 IPR000048 GO:0005515
Vian1g04004 473 MobiDBLite consensus disorder prediction 289 304 - -
Vian1g04004 473 SMART iq_5 151 173 IPR000048 GO:0005515
Vian1g04004 473 SMART iq_5 174 195 IPR000048 GO:0005515
Vian1g04004 473 Pfam IQ calmodulin-binding motif 155 173 IPR000048 GO:0005515
Vian1g04004 473 Pfam IQ calmodulin-binding motif 179 193 IPR000048 GO:0005515
Vian1g04004 473 PANTHER IQ-DOMAIN 5-RELATED 36 416 - -
Vian1g04004 473 MobiDBLite consensus disorder prediction 266 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g04004 Vian-Chr1 63110855 63112695 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g04004 36 430 IQD Protein Family AT3G16490 50.877 4.49e-94 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g04004 - - gmx:100800892 649.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g04004 1 63110855 63112695 Vian1g04004 1 63110855 63112695 ECH