Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g04003 ATGACCAGAGTTCAATTTTCAGAAGAACAGTTCATGAAATGGGTGCGATTTGTGGGTGGCCTCAAACATTCTGTCTTTAAGACAGCAAAGAATAAGCTTTTTCCTTCTCACACTCTGCATGTTTCTAAGAAGTCTGGCAAAGGAGGTTTTTCGTCAATTCAAGCAGCCATTGATTCCCTTCCATTCATCAATGTAGTGAGAGTGGTAATTAAGGTCCATGCAGGGGTTTATACGGAGAAAGTTAACATCCCTCCTTTGAAATCCTTCATAACAATACAAGGAGCTGGAGCGGATAACACCATTGTTCAATGGGGTGACAGTGCTCAAAGCCAGCCATCAGGAACCTACGGTTCTGCAACTTTTGCAGTGAATTCACCTTTTTTCGTAGCCAAGAATATCACATTCAAAGGATGTCACGTGCATGCAATAGCACAAGTTACAGGGGCCCTAACAGCCCAAGGAAGGAGCAGCTTATTACAGGACACGGGATTCTCGTTCGTTCACTGTAAGGTCACGGGCTCAGGAGCACTTTACCTTGGAAGGGCTTGGGGTCCCTTTTCTCGCGTTGTCTTTGCTTACACTTACATGGACAACATCATCATTCCCAAAGGATGGTATAACTGGGGTGACCCTAACCGTGAAATGACTGTGTTCTATGGACAGTACAAATGCACAGGAGCAGGAGCAAGGTACGCGGGGAGAGTATCATGGTCAAGGGAGCTCACTGATGAGGAAGCTAAGCCGTTTATTTCCCTTAGCTACATCGATGGCTCTGAATGGATCAATCTTTCTTTTTGA 798 0.4511 MTRVQFSEEQFMKWVRFVGGLKHSVFKTAKNKLFPSHTLHVSKKSGKGGFSSIQAAIDSLPFINVVRVVIKVHAGVYTEKVNIPPLKSFITIQGAGADNTIVQWGDSAQSQPSGTYGSATFAVNSPFFVAKNITFKGCHVHAIAQVTGALTAQGRSSLLQDTGFSFVHCKVTGSGALYLGRAWGPFSRVVFAYTYMDNIIIPKGWYNWGDPNREMTVFYGQYKCTGAGARYAGRVSWSRELTDEEAKPFISLSYIDGSEWINLSF 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g04003 265 Gene3D - 139 264 IPR012334 -
Vian1g04003 265 Gene3D - 36 138 IPR012334 -
Vian1g04003 265 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 135 262 - -
Vian1g04003 265 Pfam Pectinesterase 147 257 IPR000070 GO:0030599|GO:0042545
Vian1g04003 265 Pfam Pectinesterase 43 136 IPR000070 GO:0030599|GO:0042545
Vian1g04003 265 SUPERFAMILY Pectin lyase-like 35 263 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g04003 Vian-Chr1 63106018 63108638 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g04003 44 261 Carbohydrate Esterase AT5G07430 30.877 2.51e-37 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g04003 K01051 - jre:109015976 286.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g04003 1 63106018 63108638 Vian1g04003 1 63106018 63108638 ECH