Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03997 ATGTCGTGGCAAGCCTATGTTGATGACCACCTTCTCTGTGAGATCGAAGGTAATCACCTCACTCACGCCGCCATCATCGGTCAGGATGGCAGTGTTTGGGCTAAGAGCGGCAGTTTCCCTCAGTTCAAGTCGGAAGAAATAGTGGGGATCATGAATGACTTGAATGAGCCAGGAACACTTGCTCCTACTGGATTATACATTGGTGGTACTAAATATATGGTCATCCAAGGTGAACCCGGCTCTGTCATTAGAGGCAAGAAGTGTGGTTATTGTTTGCATCCTCTGAATAGTCAATACCGTGTTGCAGTGTTGTCTAGTGTAATGGGTCCTGGTGGTGCTACGGTCAAGAAGACCGGTTTGGCCTTGGTCATTGGCATTTATGATGAACCCATGACTCCAGGTCAATGCAACATGATAGTTGAAAGGCTTGGTGATTATCTCATTGAACAGGATCATCTATTCATACAGCTCATAGCTGATAATGGTCATGATGACCAGGTGGCATGTTCAACCTTTGGTAACTGCAATAACGGGGTTTATTGTGCTGGAGTTTGA 555 0.4577 MSWQAYVDDHLLCEIEGNHLTHAAIIGQDGSVWAKSGSFPQFKSEEIVGIMNDLNEPGTLAPTGLYIGGTKYMVIQGEPGSVIRGKKCGYCLHPLNSQYRVAVLSSVMGPGGATVKKTGLALVIGIYDEPMTPGQCNMIVERLGDYLIEQDHLFIQLIADNGHDDQVACSTFGNCNNGVYCAGV 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03997 184 PRINTS Profilin signature 3 12 IPR005455 GO:0003779
Vian1g03997 184 PRINTS Profilin signature 121 134 IPR005455 GO:0003779
Vian1g03997 184 PRINTS Profilin signature 134 151 IPR005455 GO:0003779
Vian1g03997 184 PRINTS Profilin signature 21 30 IPR005455 GO:0003779
Vian1g03997 184 Pfam Profilin 1 151 IPR005455 GO:0003779
Vian1g03997 184 Gene3D Dynein light chain 2a, cytoplasmic 1 151 - -
Vian1g03997 184 SMART prof_2 1 152 IPR005455 GO:0003779
Vian1g03997 184 CDD PROF 2 151 IPR005455 GO:0003779
Vian1g03997 184 PANTHER PROFILIN 1 151 IPR005455 GO:0003779
Vian1g03997 184 PRINTS Plant profilin signature 27 40 IPR005455 GO:0003779
Vian1g03997 184 PRINTS Plant profilin signature 71 80 IPR005455 GO:0003779
Vian1g03997 184 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779
Vian1g03997 184 PRINTS Plant profilin signature 52 66 IPR005455 GO:0003779
Vian1g03997 184 SUPERFAMILY Profilin (actin-binding protein) 2 151 IPR036140 -
Vian1g03997 184 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03997 Vian-Chr1 63056555 63058665 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03997 1 149 Cytoskeleton Gene Families AT4G29350 65.101 6.48e-67 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03997 K05759 - gmx:547670 234.187
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03997 1 63056555 63058665 Vian1g03997 1 63056555 63058665 ECH