Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03996 ATGTCTTGGCAGACTTACGTCGACGAACATTTGATGTGTGATATTGATGGCACAGGCCACCATCTCATCGCAGCTGCCATCATCGGTCACGATGGCTCTGTTTGGGCTCAAAGCACTTCTTTTCCTCAGATTAAATCTCAAGAGGTGTCCGATATCATGAAAGATTTCGACGAACCAGGTCATCTTGCTCCTACAGGTTTGCACCTTGCTGGAACCAAATACATGGTAATCCAAGGAGAGCCTGGAGCTGTTATCCGTGGCAAGAAGGAACCTGTGACTCCAGGACAATGCAACATGGTTGTGGAGAGGCTGGGAGATTACCTCGTTGATCAAGGTCTCTAG 342 0.4825 MSWQTYVDEHLMCDIDGTGHHLIAAAIIGHDGSVWAQSTSFPQIKSQEVSDIMKDFDEPGHLAPTGLHLAGTKYMVIQGEPGAVIRGKKEPVTPGQCNMVVERLGDYLVDQGL 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03996 113 PRINTS Plant profilin signature 54 68 IPR005455 GO:0003779
Vian1g03996 113 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779
Vian1g03996 113 PRINTS Plant profilin signature 73 82 IPR005455 GO:0003779
Vian1g03996 113 PRINTS Plant profilin signature 29 42 IPR005455 GO:0003779
Vian1g03996 113 SMART prof_2 1 113 IPR005455 GO:0003779
Vian1g03996 113 PANTHER PROFILIN 90 112 IPR005455 GO:0003779
Vian1g03996 113 Gene3D Dynein light chain 2a, cytoplasmic 90 113 - -
Vian1g03996 113 Pfam Profilin 1 90 IPR005455 GO:0003779
Vian1g03996 113 Gene3D Dynein light chain 2a, cytoplasmic 2 89 - -
Vian1g03996 113 SUPERFAMILY Profilin (actin-binding protein) 2 112 IPR036140 -
Vian1g03996 113 CDD PROF 2 112 IPR005455 GO:0003779
Vian1g03996 113 PRINTS Profilin signature 3 12 IPR005455 GO:0003779
Vian1g03996 113 PRINTS Profilin signature 66 80 IPR005455 GO:0003779
Vian1g03996 113 PRINTS Profilin signature 23 32 IPR005455 GO:0003779
Vian1g03996 113 PRINTS Profilin signature 42 62 IPR005455 GO:0003779
Vian1g03996 113 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03996 Vian-Chr1 63053166 63053736 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03996 1 113 Cytoskeleton Gene Families AT4G29340 73.881 7.34e-68 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03996 K05759 - gmx:100784770 214.157