Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03993 ATGGAGAACACCTGGATCCTCACTTTTCACCTTCTTCTTCTCCTCCTGCTCCATTCAAATGCAGCAAAAGGGGCCATTAATGTGGCTGTCGGTGTTGGTGGAAGAGGTGGCATAGGTGTTGGCATTGGTATTGGCAATGGGGGTAGTGGTGGTAACACCGCAGGACCCTCTGGATCCTCAGTGTCAAACCTCAACAATGCTTTCACGGCCCTCCAAGCTTGGAAATCTGCCATAACTGATGACCCTTTGAAGATTTTGGACACTTGGGTTGGTCCCAATGTGTGTTCCTACAAAGGTATCTTCTGCTCGAATTCTCAGGACGAGAATGGAATTGCCACAACAGCATCTACCGAGTCTTCTGTTGTTGCTGGAATAGATCTCAACCATGCAAATCTCCAAGGGACTCTTGTCAAAGAACTATCTTTGCTATCAGATATCACTCTTTTCCATCTCAACACCAACAGGCTTTCTGGCTCAGTTCCTGAGTCTTTCAGAGACCTCACTTCCCTACAAGAGTTGGACCTCAGCAACAACCAACTCTCAGGACCTTTTCCCACTGCCATTCTGTCCATGCCAAGCCTCGTCTACTTGGACCTCAGATACAACGACTTCTCAGGGCAACTTCCCGATGAACTCTTCAACAAGAAACTCGATGCAATATTCCTCAACAACAACAATTTTGGGGGTGAAATTCCAGAGAATCTGGGAAATTCACCTGCCTCGGTGATCAACTTGGCCAACAACAAGTTGAGCGGAAGCATCCCTTTTAGCTTTGGCTTCATGAGTTCAAGACTGAAGGAGATTCTCTTCCTTAACAACCAGTTAACAGGTTGCATTCCTCAGGGAGTAGGGATCTTCACCGAGATGCAAGTGTTGGATGTGAGTTTCAACTCTCTGATGGGCCATTTGCCTGACACAATGAGTTGCTTGCAGGATATAGAGGTTCTCAATTTGGCAAATAACAAGCTCTCAGGGGAATTATCTGATGTGGTGTGCTCCTTGAGAAGCCTGTTGAATCTAACTGTTGCTCACAATTTCTTCTCTGGGCTGAGCCAGGAATGTTCAAGGCTATTCAATGTGGGGTTTGATTTCTCGGATAACTGTATACCTGGAAGGAATATGCAAAGACCACAACCAGAGTGTTCTGGGATCCCTGGAGGTAGTCTCAATTGTCTTAGAATCCCTGCTCCAAAGCCTCTTGTTTGTGCAACTCTGGCTGCAACTTTGTCCAACCAAGCAAACTCATCTTCCTCTTCTCCCTGA 1263 0.4648 MENTWILTFHLLLLLLLHSNAAKGAINVAVGVGGRGGIGVGIGIGNGGSGGNTAGPSGSSVSNLNNAFTALQAWKSAITDDPLKILDTWVGPNVCSYKGIFCSNSQDENGIATTASTESSVVAGIDLNHANLQGTLVKELSLLSDITLFHLNTNRLSGSVPESFRDLTSLQELDLSNNQLSGPFPTAILSMPSLVYLDLRYNDFSGQLPDELFNKKLDAIFLNNNNFGGEIPENLGNSPASVINLANNKLSGSIPFSFGFMSSRLKEILFLNNQLTGCIPQGVGIFTEMQVLDVSFNSLMGHLPDTMSCLQDIEVLNLANNKLSGELSDVVCSLRSLLNLTVAHNFFSGLSQECSRLFNVGFDFSDNCIPGRNMQRPQPECSGIPGGSLNCLRIPAPKPLVCATLAATLSNQANSSSSSP 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03993 420 Gene3D Ribonuclease Inhibitor 65 240 IPR032675 -
Vian1g03993 420 PRINTS Leucine-rich repeat signature 310 323 - -
Vian1g03993 420 PRINTS Leucine-rich repeat signature 170 183 - -
Vian1g03993 420 Pfam Leucine rich repeat N-terminal domain 65 103 IPR013210 -
Vian1g03993 420 Pfam Leucine rich repeat 149 204 IPR001611 GO:0005515
Vian1g03993 420 Gene3D Ribonuclease Inhibitor 241 381 IPR032675 -
Vian1g03993 420 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 59 398 - -
Vian1g03993 420 FunFam Leucine-rich repeat extensin-like protein 1 68 237 - -
Vian1g03993 420 SMART LRR_typ_2 191 215 IPR003591 -
Vian1g03993 420 SMART LRR_typ_2 286 310 IPR003591 -
Vian1g03993 420 SMART LRR_typ_2 334 357 IPR003591 -
Vian1g03993 420 SMART LRR_typ_2 143 166 IPR003591 -
Vian1g03993 420 SMART LRR_typ_2 167 190 IPR003591 -
Vian1g03993 420 SUPERFAMILY L domain-like 68 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03993 Vian-Chr1 63024709 63025971 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03993 64 393 Leucine-rich Repeat extension Gene Families AT3G24480 48.512 9.52e-103 312
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03993 - - gmx:100786358 666.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03993 1 63024709 63025971 Vian1g03993 1 63024709 63025971 ECH