Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03991 ATGAATAAGATGAGCAAGTTGAGTTGTGTTAGGAGCTCTGATCTGATAGATGCAAAGCTGGAAGAGCATCAACTGTGTGGATCCAAACAGTGCCCCGGTTGTGGTCACAAATTTGAAGGGAAGCCGGACTGGCTAGGTCTTCCAGCGGGAGTGAAATTTGATCCAACAGACCAAGAACTCATAGAACATCTTGAAGCCAAAGTCGAAGCAAAGAACATCAAATCACACCCTCTCATAGATGAGTTCATTCCCACTATTGAAGGAGAAGACGGGATTTGTTACACCCATCCTGAGAAACTTCCAGGAGTGACAAGAGATGGGTTAAGCAGACACTTCTTCCACAGGCCCTCAAAGGCTTACACAACAGGGACACGAAAGAGGAGAAAGATTCAAAACGAATGCGACTTGCAAGGAGGGGAAACCCGATGGCACAAGACAGGTAAGACAAGACCAGTGATGGTCAATGGCAAACAAAAGGGTTGCAAGAAGATTCTAGTGCTCTACACCAACTTCGGCAAGAATAGAAAACCCGAAAAGACTAACTGGGTTATGCACCAGTACCATCTGGGCCAGCACGAGGAAGAAAAAGAAGGAGAGCTCGTGGTTTCAAAGATATTCTACCAGACACAACCGAGGCAGTGCAATTGGTCAGATAGAAGTGCCACAACTGGTGAAGCAAGTGGAGAACAACAACCCAACAATAATGGAAGAAGAGACAGCGGAAGTGGGAGTTGTTCTTCTAAGGAAGTTCTCACTCACAGAGATGAAATGTCTGCTATCGTTGGAGTCCCTCAAATAGCAACCTTCAACACTTCCTTGGACATTCAACAACTCAAATCCGACCATTTTAGCTTCATTCCATTCAGAAAAAGCTTCGATGAGGTTGGGATAGGAGAAGCTTCCACGGGAGTGCAAGCATCAAGGTCGTGTGAGGAAGTACATGAAGGGCATAATATTGTAGCACATCATCATCATCATCAACAACAACAGCAGCAAAATCAGCATGCGCACCAACAAATTGCAACCACAGCCTTCCATATCAGTAGGCCTTCGCATCCCATCTCGACCATCATCTCTCCTCCACCCCTTCACCACGCATCCATCATCCTAGACGACAACGCCTACCATGTCTCAACGATCATGCTTCAAAATGAAAACTTCCAGCAGCAGCACCATCATAAACTAGGAGGAAGGTCTGCGTCTGGTTTGGAGGAACTCATCATGGGGTGCACTTCAACTGATATCAAAGAGGAGTCATCCATTACAAACCAACAAGAGGCTGAATGGTTGAAATACTCTTCTTACTGGACAGACCCTGGCAACCTGCACGATCATCATGAGTAG 1344 0.4606 MNKMSKLSCVRSSDLIDAKLEEHQLCGSKQCPGCGHKFEGKPDWLGLPAGVKFDPTDQELIEHLEAKVEAKNIKSHPLIDEFIPTIEGEDGICYTHPEKLPGVTRDGLSRHFFHRPSKAYTTGTRKRRKIQNECDLQGGETRWHKTGKTRPVMVNGKQKGCKKILVLYTNFGKNRKPEKTNWVMHQYHLGQHEEEKEGELVVSKIFYQTQPRQCNWSDRSATTGEASGEQQPNNNGRRDSGSGSCSSKEVLTHRDEMSAIVGVPQIATFNTSLDIQQLKSDHFSFIPFRKSFDEVGIGEASTGVQASRSCEEVHEGHNIVAHHHHHQQQQQQNQHAHQQIATTAFHISRPSHPISTIISPPPLHHASIILDDNAYHVSTIMLQNENFQQQHHHKLGGRSASGLEELIMGCTSTDIKEESSITNQQEAEWLKYSSYWTDPGNLHDHHE 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03991 447 Gene3D NAC domain 56 212 IPR036093 GO:0003677|GO:0006355
Vian1g03991 447 Pfam No apical meristem (NAM) protein 48 189 IPR003441 GO:0003677|GO:0006355
Vian1g03991 447 ProSiteProfiles NAC domain profile. 47 208 IPR003441 GO:0003677|GO:0006355
Vian1g03991 447 SUPERFAMILY NAC domain 43 208 IPR036093 GO:0003677|GO:0006355
Vian1g03991 447 MobiDBLite consensus disorder prediction 215 248 - -
Vian1g03991 447 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 12 335 IPR044799 GO:0003700
Vian1g03991 447 MobiDBLite consensus disorder prediction 215 250 - -
Vian1g03991 447 FunFam NAC domain-containing protein 73 56 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03991 Vian-Chr1 63002343 63006249 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03991 14 436 NAC Transcription Factor Family AT5G56620 54.018 3.31e-138 401
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vian1g03991 NAM 3.3e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03991 - - gmx:100794811 779.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03991 1 63002343 63006249 Vian1g03991 1 63002343 63006249 ECH