Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03984 ATGGGAAGAGCTCCATGTTGTGACAAAGCTAATGTCAAAAGGGGTCCTTGGTCTCCCGAAGAAGATGAAACCCTCAAAAACTATCTCAAGAAACATGGCACTGGTGGCAATTGGATAACTCTCCCACAAAAAGCAGGCCTAAAGCGGTGTGGGAAAAGTTGTCGTCTGAGATGGCTGAACTATCTCAGACCTCATATCAAGCATGGAGGTTTCACCGATGAGGAAGACCAAGTTATCTGCAACCTTTATTCAACCATCGGAAGCAGGTGGTCTCTTATTGCGGCTCAGTTACCTGGGAGAACGGACAACGATGTGAAAAACCATTGGAACGCTAAGTTAAAGAAAAAGTTTTTGGTAGCAAACACCAATGCCACTGTGGATACTGTTTGTCCACAGTTCACAACTTCCACTACTCCTCAGTCTCGAGCTGAAGACCGTGTCTTCGATCATGAGAACTCAGCCGAGTCTCGTGTTTTGGGTTTGGAGCGGACACACATTCCAGTTCCTTCACCATTGCCTTTAGGATCTAATGTCTCAGGTCTTGGCAGCAGCTGTAGTGTACCACTATCCAATGAAGTTTCAGTCGTTTCAAACTCAACATCCTTTGCGAAACAGGAAAACCAGACTCAATGGTTTGGCTATGATGACGATATTGAAGGTCAAAATGAAGCACTTTTGCTTGATTTTGTGTACGAAGATCTCTTGCTTAGTAATGGGTTTGTTTCTCAAGAAAAAAGCAGCGAAATTGCGCCATCATTTGGCTAA 765 0.4431 MGRAPCCDKANVKRGPWSPEEDETLKNYLKKHGTGGNWITLPQKAGLKRCGKSCRLRWLNYLRPHIKHGGFTDEEDQVICNLYSTIGSRWSLIAAQLPGRTDNDVKNHWNAKLKKKFLVANTNATVDTVCPQFTTSTTPQSRAEDRVFDHENSAESRVLGLERTHIPVPSPLPLGSNVSGLGSSCSVPLSNEVSVVSNSTSFAKQENQTQWFGYDDDIEGQNEALLLDFVYEDLLLSNGFVSQEKSSEIAPSFG 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03984 254 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Vian1g03984 254 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Vian1g03984 254 FunFam Transcription factor RAX3 7 68 - -
Vian1g03984 254 CDD SANT 16 62 IPR001005 -
Vian1g03984 254 SMART sant 67 115 IPR001005 -
Vian1g03984 254 SMART sant 13 64 IPR001005 -
Vian1g03984 254 Gene3D - 7 68 - -
Vian1g03984 254 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Vian1g03984 254 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
Vian1g03984 254 PANTHER OS09G0431300 PROTEIN 1 168 - -
Vian1g03984 254 Gene3D - 70 132 - -
Vian1g03984 254 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Vian1g03984 254 CDD SANT 71 110 IPR001005 -
Vian1g03984 254 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Vian1g03984 254 Pfam Myb-like DNA-binding domain 69 110 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03984 Vian-Chr1 62923933 62925004 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03984 1 118 MYB Transcription Factor Family AT5G65790 80.508 3.11e-72 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vian1g03984 Myb_DNA-binding 1.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03984 K09422 - gmx:778160 297.745