Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03980 ATGGTGGAGAAAGCCAAGGGTAGGAAAGAGGAGGTCGTCTCTCGAGAGTACACCATCAACCTCCACAAACGCTTACATGGCTGCACGTTTAAGAAGAAGGCTCCCAAAGCAATTAAGGAAATAAGGAAGTTTGCGCAGAAGGCGATGGGGACGAATGACGTGAGAGTGGATGTGAAGCTCAACAAGTATGTCTGGAGTCAGGGGATCCGGAGTGTTCCCAGGAGGATTAGGGTTCGCATTGCTCGCAAGAGGAATGATGATGAGGATGCCAAAGAAGAGCTATACTCTCTTGTTACCGTCGTCGAGATCCCCAAGGAGGAGCTTAAAGGTTTGGGCACTAAGGTTATTGATGATGAGGATTGA 363 0.4876 MVEKAKGRKEEVVSREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAMGTNDVRVDVKLNKYVWSQGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVVEIPKEELKGLGTKVIDDED 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03980 120 Gene3D - 9 120 IPR023621 -
Vian1g03980 120 SMART Ribosomal_L31e_2 10 93 IPR000054 GO:0003735|GO:0005840|GO:0006412
Vian1g03980 120 Pfam Ribosomal protein L31e 11 92 IPR000054 GO:0003735|GO:0005840|GO:0006412
Vian1g03980 120 FunFam 60S ribosomal protein L31 6 120 - -
Vian1g03980 120 SUPERFAMILY Ribosomal protein L31e 11 92 IPR023621 -
Vian1g03980 120 PANTHER 60S RIBOSOMAL PROTEIN L31 2 119 IPR000054 GO:0003735|GO:0005840|GO:0006412
Vian1g03980 120 ProSitePatterns Ribosomal protein L31e signature. 54 68 IPR020052 GO:0003735|GO:0005840|GO:0006412
Vian1g03980 120 CDD Ribosomal_L31e 9 92 IPR000054 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03980 Vian-Chr1 62900475 62900971 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03980 2 120 Cytoplasmic Ribosomal Protein Gene Family AT2G19740 80.672 6.42e-68 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03980 K02910 - gmx:100810835 221.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03980 1 62900475 62900971 Vian1g03980 1 62900475 62900971 ECH