Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03977 ATGGGAAGGAGGATCCTGAACGATGCCTTGAGGAGTATGGTGAATGCAGAGAGAAGAGGGAAAGCTATGGTGGAACTCAAGCCAATTTCCACTGTTATGTCTTCATTTCTCCGAATCATGAAAAACCATGGTTATATCAAAGACTTTCAAGTCTATGATCCGCATAGAGTGGGGAGGATAACGGTTGAACTACAAGGTAGGATTAACGATTGCAAGGCTCTTACATACCGAAAAGATATGAAGGCAAGGGATCTTGAAGCCTACAGATTGCAGACTCTTCCTACTCATCAGTGGGGTTATGTTGTGATTACTACTCCTGACGGTGTTTTGGATCATGAAGAAGCCATTAAGAAGAATGTAGGCGGCCAGGTTCTTGGTTACTTTCACTGA 390 0.4333 MGRRILNDALRSMVNAERRGKAMVELKPISTVMSSFLRIMKNHGYIKDFQVYDPHRVGRITVELQGRINDCKALTYRKDMKARDLEAYRLQTLPTHQWGYVVITTPDGVLDHEEAIKKNVGGQVLGYFH 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03977 129 SUPERFAMILY Ribosomal protein S8 3 129 IPR035987 GO:0003735|GO:0005840|GO:0006412
Vian1g03977 129 FunFam 40S ribosomal protein S15a 1 68 - -
Vian1g03977 129 ProSitePatterns Ribosomal protein S8 signature. 99 116 IPR000630 GO:0003735|GO:0005840|GO:0006412
Vian1g03977 129 Gene3D - 69 129 - -
Vian1g03977 129 FunFam 40S ribosomal protein S15a-5 69 129 - -
Vian1g03977 129 Pfam Ribosomal protein S8 6 127 IPR000630 GO:0003735|GO:0005840|GO:0006412
Vian1g03977 129 PANTHER 40S RIBOSOMAL PROTEIN S15A 1 128 IPR000630 GO:0003735|GO:0005840|GO:0006412
Vian1g03977 129 Gene3D - 2 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03977 Vian-Chr1 62878929 62879823 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03977 1 129 Cytoplasmic Ribosomal Protein Gene Family AT4G29430 82.171 8.49e-81 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03977 K02957 - gmx:100306361 250.751