Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03972 ATGAGCAAAACCGCATTGAAGCTTGCGGTTTCACGGTTGAATCTTTTGAAGAACAAGAGCGAATTGCATGTGTGGAATCTCCGGAAAGAATTGGCTGACTTTCTTCGCTCTGGCCACAACCATGCTGCCAGAGTCAAGGTTGAATATGTGGTGATGGAAGAGAAGACCATGGGAGCATACGATCTTATTAAGATATACTGTGAACTTATTACAGCACGTTTGCCAGTGATTGAATCACAAAAAAACTGCCCCATGGATTTGAAGGAAGCGATTTCGAGTGTAATATTTGCGTCCCCAAGATGTTCGGATATACCTGAGCTTGTGGATGTGAAGAAGCATTTTACGGCTAATATTGTGGTTCAGTTGGTTGAGAAATTGTCTCCCAGAGCACCAGACGGTCCAACCAAAATCAGAATACTGATTGAAATTGCAGAGGAATATAATGTCAAATGGCAACCGTCTTTAGAAGAAAATGATGAGAAATTGTCTCACGATTTACTTCGTGTTCCACTTGTTGGTGATGAAGAAGAACATCCTAGTTTACATGCTTCTTGTCAACTTAAAGAAATGCAAGATAAGTCTAGAAGTTTCTGTGAGAAGAATGGAAAACTAAATTCTTCAGGTACTAGAAATCAGGAAGAGGATTTTGGAAACTTGTGTTGTGAAAGCACGAGTGCTTTTCAAAAGGGTAGACATAACTGGGAGATGGAATTCAAGCATGCTGCAACTGCTGCACAGGCAGCTGCAGAATCTGCAGAACGTGCAAGCGTGGCTGCAAAAGCAGCTGCTGAACTTTCCAACCGTGAAAAGTTAATAAGGCAGTGTTCAGGTGAATGGCAGAGTTCTTGTAGAGGAGGGTTTAGAGCTGAATTATCTCTAGAATATGCTTTTCATTCTTCCAAACATCTTTCTGCTGGTTATGCTGCTAGCACATTCCGAAGAAGCGCTTTTGAGATTAATGTAAGAGAACAAAATAGACTGGTAGGACCACACAATGAACATTTCATGAATGGTGATGATAATGTGGTGAAGCCTTACCAGAAAGTGCAGGGTGAAGCAAACAAGGAATCAAGCGGAAGTGGCTCAGATGCATACTTAGATTGTGATACTAGTGATTCTGAGGATGGAGTTTCTGAACAAAATTCAGTCATTCTTGCGCATCCTTCAAAAACTGCAATGATACCAGATAAGGAAGAGACTTCAAAACCATTAAATTGTGATAAGGATATTCCCTCAAAGGAGAAGATTATAGCGATGGATCCAGACAGAAAAGCTTATGAGATAGGGCTACCATTCATTAAAAGGGCTGGTGTTCAACACAAGATTGACTTCATAGAGTCTCCAGCTTTACCAGTTCTTGATAAGCTCTTAGAAGATGCTGAAAATGAGGGGAGTTTTGACTTTGCTTTCATTGATGCTGACAAGAACAATTACTGGAATTACCACGAGAGAGTTATGAGATTGGTGAAGATTGGTGGAATAGTTGCATATGATAACGCACTGTGGGGAGGAACTGTTGCCTTGCCTGAAAAGGCAGTTTCGAAGGATAAACAAGAGTGGAGACTGTTATCGCTTGCTTTCAACGAAGCAATTTCAAAGGATTGTCGTGTTCAAATTGCTTTTGTTTCAATCGGTGATGGAGTCATTTTCTGCAGGCGTATTGCTTGA 1668 0.4095 MSKTALKLAVSRLNLLKNKSELHVWNLRKELADFLRSGHNHAARVKVEYVVMEEKTMGAYDLIKIYCELITARLPVIESQKNCPMDLKEAISSVIFASPRCSDIPELVDVKKHFTANIVVQLVEKLSPRAPDGPTKIRILIEIAEEYNVKWQPSLEENDEKLSHDLLRVPLVGDEEEHPSLHASCQLKEMQDKSRSFCEKNGKLNSSGTRNQEEDFGNLCCESTSAFQKGRHNWEMEFKHAATAAQAAAESAERASVAAKAAAELSNREKLIRQCSGEWQSSCRGGFRAELSLEYAFHSSKHLSAGYAASTFRRSAFEINVREQNRLVGPHNEHFMNGDDNVVKPYQKVQGEANKESSGSGSDAYLDCDTSDSEDGVSEQNSVILAHPSKTAMIPDKEETSKPLNCDKDIPSKEKIIAMDPDRKAYEIGLPFIKRAGVQHKIDFIESPALPVLDKLLEDAENEGSFDFAFIDADKNNYWNYHERVMRLVKIGGIVAYDNALWGGTVALPEKAVSKDKQEWRLLSLAFNEAISKDCRVQIAFVSIGDGVIFCRRIA 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03972 555 Gene3D - 1 158 IPR042277 -
Vian1g03972 555 Pfam O-methyltransferase 407 554 IPR002935 GO:0008171
Vian1g03972 555 MobiDBLite consensus disorder prediction 351 367 - -
Vian1g03972 555 MobiDBLite consensus disorder prediction 350 375 - -
Vian1g03972 555 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 413 553 IPR029063 -
Vian1g03972 555 Gene3D Vaccinia Virus protein VP39 404 555 IPR029063 -
Vian1g03972 555 PANTHER IST1 FAMILY MEMBER 3 370 IPR005061 GO:0015031
Vian1g03972 555 Pfam Regulator of Vps4 activity in the MVB pathway 3 150 IPR005061 GO:0015031
Vian1g03972 555 ProSiteProfiles SAM-dependent O-methyltransferase class I-type profile. 410 554 IPR002935 GO:0008171
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03972 Vian-Chr1 62841811 62847531 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03972 410 554 Monolignol Biosynthesis Gene Families AT4G26220 56.552 7.64e-56 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03972 - - vra:106766636 662.529