Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03964 ATGGGGAGGAAGTGCTCGCATTGTGGAGTTATAGGGCATAATTCAAGGACCTGCACATCTTTGAGAGGCTCTTCTTTCGTTGGACTTCGTCTCTTTGGCGTGCAATTAGACACTTGTGTTACCATCAAGAAAAGCTTCAGCATGGACTCCTTACCCTCTTCATCATCTTCCTCATTTTCTTCTTCAAGAATAACCATCGATGAAAACTCTGACCGAACCTCTTTTGGGTATCTATCAGATGGTCTCATAGGTCGTGTTCAAGAGAGGAAGAAAGGAGTGCCATGGACAGAAGAGGAACACAGAATATTCCTTGTCGGACTGGAGAAGCTGGGAAAGGGTGATTGGAGGGGAATCTCCAGAAACTTTGTGACCACAAGAACTCCAACACAAGTGGCAAGCCATGCTCAGAAGTACTTTCTTAGATTGGCAACTATAGATAAGAAGAAGCGACGTTCTAGTCTCTTTGACGTGGTCGGTAGCAACAACGTAGGAGGTTGTAATTCAGTTTCGGGTTATCATAAAAAAGATGATTCGAAATGTGAAGTTAAGAATAGTGATGCGACTTTGTCGTTGCTAGGGCGCATAACCTACTTTCAACAAGAAAGCAAATCGGATTATAAGAAGCAAGAAAAGCTTGAAAATTGCCCTCATCAAGTTCCTAATCTGGAGCTTACTCTTCGTTCCTGCTTGGGACAATTAGTGTGA 705 0.4312 MGRKCSHCGVIGHNSRTCTSLRGSSFVGLRLFGVQLDTCVTIKKSFSMDSLPSSSSSSFSSSRITIDENSDRTSFGYLSDGLIGRVQERKKGVPWTEEEHRIFLVGLEKLGKGDWRGISRNFVTTRTPTQVASHAQKYFLRLATIDKKKRRSSLFDVVGSNNVGGCNSVSGYHKKDDSKCEVKNSDATLSLLGRITYFQQESKSDYKKQEKLENCPHQVPNLELTLRSCLGQLV 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03964 234 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 87 143 IPR017930 -
Vian1g03964 234 FunFam transcription factor MYB1R1 93 144 - -
Vian1g03964 234 PANTHER TRANSCRIPTION FACTOR KUA1 3 185 - -
Vian1g03964 234 Pfam Myb-like DNA-binding domain 94 139 IPR001005 -
Vian1g03964 234 SMART sant 91 141 IPR001005 -
Vian1g03964 234 Gene3D - 93 145 - -
Vian1g03964 234 NCBIfam myb-like DNA-binding domain, SHAQKYF class 90 141 IPR006447 GO:0003677
Vian1g03964 234 ProSiteProfiles SANT domain profile. 95 143 IPR017884 -
Vian1g03964 234 SUPERFAMILY Homeodomain-like 88 143 IPR009057 -
Vian1g03964 234 CDD SANT 94 139 IPR001005 -
Vian1g03964 234 ProSiteProfiles Myb-like domain profile. 87 139 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03964 Vian-Chr1 62763946 62764913 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vian1g03964 Myb_DNA-binding 1.8e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03964 - - gmx:778093 349.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03964 1 62763946 62764913 Vian1g03964 1 62763946 62764913 ECH