Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03963 ATGCTTTCAGTGAACTTCGCCGAGTCTTTTGCAGGTACCGATCCTGGTGGTTTCAACAACAGTGTTGCTGAACAGCAGGCTGTCTTGGAAACTGTTGCCAGAGTTATGCCCAAGAAAAATGAAAGCAAAGAAGAAAAGCCATTTCAGTTCCACGATGTTTTCAACTTAGACAATGAGAATAGAGCAGACGATATGCCAACTTTAATTGATCGGAAGGACAATGTCTTTATCATATCCAATCCTAAGTCAAAGTATCCAGTTCTCCAATTAGACTTGAGATTGATATCAGATCTTGTGGTTGTCATTGTGTCTGCAACCTGTGGCGGCATTGCCTTTGCTTCTGCTGGACAACCAGTGATGACTGGATATCTGCTAGCAGGATCAATCATTGGACCAGGAGGTTTGAGTTTTGTTAGTGAAATGGTCCAAGTTGAGACAGTTGCTCAATTTGGTGTCATCTTTTTGCTCTTTGCATTGGGCTTAGAGTTTTCAGCAACGAAGTTATGTGGTGGTAAATCATCTGAAGGAATATTTGTAGGTGCATTTCTATCCATGTCTTCAACAGCTGTGGTCTTGAAATTCTTAATGGAAAGGAATAGCGTCAATGCCCTTCATGGTCAGGTTACAATTGGAACTCTGATACTGCAGGATTGTGCCGTTGGTTTGCTCTTTGCACTGCTTCCTGTTTTGGGTGGAACATCAGGTGTTCTTCAAGGAGTAGTATCCATGGCTAAGTCATTGGTGACCTTAATTGCATTTTTGGCCATTTTGACAATGTTATCTCGTACTTGTGTACCATGGTTCCTTAAGTTAATGATAAGTTTATCCTCTCAGACGAATGAACTTTATCAATTGGCATCAGTGGCTTTCTGCCTACTTGTTGCTTGGTGTAGTGATAAGCTGGGTTTAAGTCTTGAACTAGGTTCCTTTGCTGCGGGAGTGATGATATCGACAACAGATCTTGGTCAGCATACACTTGAACAAGTTGAGCCAATTCGCAATTTTTTTGCTGCTCTGTTCTTGGCCAGCATTGGGATGCTTATACATGTCCATTTCCTTTGGAATCATGTTGACATGTTACTGGCAGCTGTTATATTGGTGATCATTATAAAAACAATTGTAGCTGCATCTGTTGTTAAGGGGTTTGGATACAGCAACAAGACTTCACTTCTTGTTGGGATGTCCCTGGCACAAATTGGGGAATTTGCCTTTGTTCTTCTCAGCCGTGCTTCAAATCTTCATTTAGTTGAGGGAAAGTTGTATCTATTGCTCCTGGGAACAACAGCTCTTAGTTTGGTGACTACACCTTTACTCTTCAAGCTAATTCCTGCAGTTGTGCATCTTGGGGCATTGTTACGGTGGTTCCCTCCTGATAGTTCAACTGAGATTGCATTTAAAGGGGACAGCTTTCGTGTAGACAGTGCTAAGCGTATTACTTTGATGGTTCAAGGCTCTCATGATTCATGA 1467 0.4179 MLSVNFAESFAGTDPGGFNNSVAEQQAVLETVARVMPKKNESKEEKPFQFHDVFNLDNENRADDMPTLIDRKDNVFIISNPKSKYPVLQLDLRLISDLVVVIVSATCGGIAFASAGQPVMTGYLLAGSIIGPGGLSFVSEMVQVETVAQFGVIFLLFALGLEFSATKLCGGKSSEGIFVGAFLSMSSTAVVLKFLMERNSVNALHGQVTIGTLILQDCAVGLLFALLPVLGGTSGVLQGVVSMAKSLVTLIAFLAILTMLSRTCVPWFLKLMISLSSQTNELYQLASVAFCLLVAWCSDKLGLSLELGSFAAGVMISTTDLGQHTLEQVEPIRNFFAALFLASIGMLIHVHFLWNHVDMLLAAVILVIIIKTIVAASVVKGFGYSNKTSLLVGMSLAQIGEFAFVLLSRASNLHLVEGKLYLLLLGTTALSLVTTPLLFKLIPAVVHLGALLRWFPPDSSTEIAFKGDSFRVDSAKRITLMVQGSHDS 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03963 488 Gene3D - 92 170 IPR038770 -
Vian1g03963 488 Gene3D - 171 447 IPR038770 -
Vian1g03963 488 Pfam Sodium/hydrogen exchanger family 99 168 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Vian1g03963 488 Pfam Sodium/hydrogen exchanger family 169 440 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Vian1g03963 488 PANTHER POTASSIUM/PROTON ANTIPORTER-RELATED 167 479 IPR045158 GO:0015386|GO:0071805|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03963 Vian-Chr1 62750718 62757994 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03963 14 488 Antiporters AT2G19600 82.016 0.0 786
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03963 K26735 - gmx:100788884 830.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03963 1 62750718 62757994 Vian1g03963 1 62750718 62757994 ECH