Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03952 ATGGAAGACTATGATACACGGAGGGATAATGGTGGAAGTGGAGTGGCAGTGCCACCCTGCACTTGCTCGGGAGAAGAATTTCGCGCGTCTGGCGGTGGAAAAGGATCATTGCGAGTTGTCGCGGCTGCTAGAAACGGTTCTTCTGTTTCAAATTATGACATGGCTGTGTCGCGGAACGTCAAGAAAACACAAAAGCGTAAAGGTCTTCAGGAGCTGTTCACAGCCGATTACATTGTGAACAGAGTGTTGCGGAAGGACGGTCCTTCGCTTGGTCAGGAGTTTGACTTTCTTCCTTCTGGACCCAGACACACTTCTGCTTGTCAAGAGGACCAAGGATCCTCAAAAAAGAGGAAGGGTTCCAAGAGTGCAATTCAAAGTCTCACCGATTGTAATAGGACAGCACCTGTGAAGAAGCATGGTATTGGCAAAGGTCTGATGACAGTTTGGAGGGCAACAAATCCTGATGCTGGAGACCTTCCAATTAATTTTGGCGTTGATGGCCAAGAAGTTCCTTTACTTTCAAATTCTATAGGACTGAAGCTGATCCATGAAAACAACAGATCACGAAAAACAGTAAACAGGAATGTAATGCCAAAAAATAAAATGCAGAATAAGAGAAATAAATCACAGGATAAGAGGAAAATTTCCATGCAAAGAAGAGTGGGGGAACTGAACCTAGGTGTGACTCAGAATCAGTCACCAAATAAAAGCTGTGGACTAGCTCTTGATAATGCAATATCCGAGGAGGGAGTTGATCGAGTTTCAATGTTAATTGATGATGAAGAGCTAGAGCTGAGGGAGTTACAAGTAGAAACTGATCTGTTTAGGTGTTCTAATCATCTTGCTGCCAGTGGAATGCTTGTCTGCTCACTTTGTAAAGATGCGCTAGTGAAGTTTCCACCAGATACTGTCAAGATGAAGAAACCTATCCATTTGCAACCATGGGACTCCTCTCCTGAAATTGTGAAGAAATTATTTAAGGTTTTCCATTTCATTTATACATATGCCATAATTGTTGATATTTGTCCCTTCACTCTTGACGAGCTTGTTCAAGCTTTTCATGACAAGGACTCAATGTTACTTGGCAAGATTCATGTAGCCCTGCTCACACTTCTTCTATCTGACATTGAAGCGGAGCTAACTAATGGATTTTCACCTCATTTAAATAAATCATGTAACTTTCTTGCATTGCTTCACTCGGTTGAAAGTCAGGAATATTCCCTGGACTTCTGGAGAAGATCTCTAAATTCTCTTACTTGGATTGAAATACTTCGTCAAGTGCTGGTTGCTTCTGGATTTGGTTCGAAACAAGGGTCCTTACGTAGAGATGTCCTTAACAAGGAATTGAATCTTCTTGTAAACTATGGTCTATGCCCTGGCACCTTGAAGAGTGAGTTGTTTAATATTTTGTCAGAGAGAGGAAACACTGGATGCAAAGTGGTTGAGCTGGCAAAGTCAATGCAGATTGTTGAATTAAACCTTGCCAGCACTACAGAGGAACTTGAGTCTTTAATATGTTCTACTCTGTCAAGTGATATTACTTTATTTGAAAAGATTTCATCGACTGCTTACCGACTGCGAATGAGCACAGTTATGAAGGACAGTGATGAATCTCATTCAGATACGGAGTACTCTGGTAGTGTTGATGATGAACTTGATGACACTGATACATGCAGCAGTGCTGATGATTTTGAAAATGATTCAATTAATTCCAGTATAAGAAAATTGAAGAGTGTAAACAGTCATAAAAATAATATGCGGAAAATATACACTGAAATTGATGAGAGCCGTTCCGGAGAAGCATGGTTGTTAGGACTGATGGAGAGTGAATATTCGAACTTAAAAATTGAAGAAAAATTGAATGCATTGGCAGCTTTAACTGATCTTGTTTCATCTGGATCCAGCGTTAGGATGAAGGATTTGTCTAAAGTCTCAGCTGATTGCAATTCTAGCATCCAATTACCAGGATCTGGAGCTAAAATAAAGAGATCAGTAGTAACGAAACCTGGGTCCCTTTTGAACCATAAAGTACACTTGAATTCTGATCCCTGTAGTGTAGACTCCTCATTATTATTCTCAAGATTCCACAGTTATGAAGCTTACTTCCAAAAGGGAAACGGTCCATCTATGTCACATCCCATTCAATCAGTGTTTTTGGGATCTGATCGTCGGTACAATAGATACTGGCTTTTCTTGGGCCCATGTAATGTAGATGATCCTGGTCACAGGAGGATATATTTTGAATCTTCTGAAGATGGTCACTGGGAGGTTATTGATACTGTGGAGGCGTTATGTGCATTGATGTCAGTTCTGGACGATAGAGGAAAACGGGAGGCTCTTCTTATTGAATCATTGGAAAGGAGACAAACATCACTATGCAGATCTATGGCCAGGATTAATGTTAATAGTACTGGAATGGGTTCTATGTCACATTCTGATCAGTCTGAACTGGATATGGTCACAGATGACAGTTATTCTCCTGCATCTGATGTAGACAACCTGAACATGACCGAGACAGCTAAAGACTCCTTTCCTTCAGCTGGGGCTGTGGTAATTGAAGCTGGAAAGAAAGTAGAGGATCTAATTAAAAAATGGATCCGTGTTCAAGAATACGATTCTTGGATTTGGAATTCTTTTTACTCAGATCTCAATGTTGTAAAATATGGTAGAAGGTCTTACATGGACTCTCTTGCCAAATGTAAGAGTTGTCATGATCTTTACTGGCGAGATGAGAGACACTGTAAAATTTGCCATATGACATTTGAGCTTGATTTTGACCTAGAAGAAAAATATGCTATCCACATAGCCACATGCAGGGAGAAAGAAGACAACAACACATTTCCTAATCACAAAGTGCTGCCATCACAGATTCAATCTCTGAAAGCTGCAGTTTATGCTATTGAGTCTGTTATGCCTGAGGATGCCCTGGTTGGTGCTTGGAGGAAATCTGCTCATAAACTATGGGTGAAACGACTCAGACGCACCTCAACTTTAGTGGAGCTTTTACAGGTTCTTGATGATTTTGTTGGTGCCATCAATAAGGACTGGTTGTTTCAATGCAAATTTCCGGATGATGTGTTTGAAGAAATCATTTCATCGTTTGCATCTATGCCCCGTACATCATCCGCCCTTGGTTTGTGGTTAGTGAAGCTAGATGTCATAATTGCTCCCTACCTGGACAGAGTCCATCCTCTGAAAAAGCAGGGAACCGGTCAACATGGTCCTTGGCGATAG 3234 0.41 MEDYDTRRDNGGSGVAVPPCTCSGEEFRASGGGKGSLRVVAAARNGSSVSNYDMAVSRNVKKTQKRKGLQELFTADYIVNRVLRKDGPSLGQEFDFLPSGPRHTSACQEDQGSSKKRKGSKSAIQSLTDCNRTAPVKKHGIGKGLMTVWRATNPDAGDLPINFGVDGQEVPLLSNSIGLKLIHENNRSRKTVNRNVMPKNKMQNKRNKSQDKRKISMQRRVGELNLGVTQNQSPNKSCGLALDNAISEEGVDRVSMLIDDEELELRELQVETDLFRCSNHLAASGMLVCSLCKDALVKFPPDTVKMKKPIHLQPWDSSPEIVKKLFKVFHFIYTYAIIVDICPFTLDELVQAFHDKDSMLLGKIHVALLTLLLSDIEAELTNGFSPHLNKSCNFLALLHSVESQEYSLDFWRRSLNSLTWIEILRQVLVASGFGSKQGSLRRDVLNKELNLLVNYGLCPGTLKSELFNILSERGNTGCKVVELAKSMQIVELNLASTTEELESLICSTLSSDITLFEKISSTAYRLRMSTVMKDSDESHSDTEYSGSVDDELDDTDTCSSADDFENDSINSSIRKLKSVNSHKNNMRKIYTEIDESRSGEAWLLGLMESEYSNLKIEEKLNALAALTDLVSSGSSVRMKDLSKVSADCNSSIQLPGSGAKIKRSVVTKPGSLLNHKVHLNSDPCSVDSSLLFSRFHSYEAYFQKGNGPSMSHPIQSVFLGSDRRYNRYWLFLGPCNVDDPGHRRIYFESSEDGHWEVIDTVEALCALMSVLDDRGKREALLIESLERRQTSLCRSMARINVNSTGMGSMSHSDQSELDMVTDDSYSPASDVDNLNMTETAKDSFPSAGAVVIEAGKKVEDLIKKWIRVQEYDSWIWNSFYSDLNVVKYGRRSYMDSLAKCKSCHDLYWRDERHCKICHMTFELDFDLEEKYAIHIATCREKEDNNTFPNHKVLPSQIQSLKAAVYAIESVMPEDALVGAWRKSAHKLWVKRLRRTSTLVELLQVLDDFVGAINKDWLFQCKFPDDVFEEIISSFASMPRTSSALGLWLVKLDVIIAPYLDRVHPLKKQGTGQHGPWR 1077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03952 1077 MobiDBLite consensus disorder prediction 118 132 - -
Vian1g03952 1077 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 715 788 IPR028941 -
Vian1g03952 1077 Coils Coil 251 271 - -
Vian1g03952 1077 ProSiteProfiles DDT domain profile. 319 378 IPR018501 -
Vian1g03952 1077 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 598 637 IPR028942 -
Vian1g03952 1077 Pfam DDT domain 322 375 IPR018501 -
Vian1g03952 1077 MobiDBLite consensus disorder prediction 96 137 - -
Vian1g03952 1077 PANTHER HOMEOBOX PROTEIN SIX 210 1054 - -
Vian1g03952 1077 SMART testlast3 319 378 IPR018501 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03952 Vian-Chr1 62627543 62636112 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03952 240 1055 Homeobox Transcription Factor Family AT1G28420 26.687 2.54e-73 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Vian1g03952 WSD 1.6e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03952 - - gmx:100792062 1808.5