Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03947 ATGGGGATTTGCTTTAGCATTGAAGACAAGAGCAACCTCTCCGTCTCCGATTCCAACGCTAAGCCAAAGCCTCAAGGATCAGTAGGTCATGAATCTGCCGCTCCAATTGTTTCCATAAACATCAAAGATCTCCGCGAAGGTGTTGGATACAGCAATGTGGATAGTTTCACGTACGAGGAACTGAGGCTTGCTACGAAGCATTTTCGTCCCGATTTCATCTTGGGAGAAGGAGGCTTCGGAGTTGTATATAAAGGCGTCATAGACCATGGTGTGAGGTCGGGTTACAAGACCACTGAGGTCGCAATTAAGGAACTTAATCGCGAAGGATTTCAAGGAGACAGGGAATGGCTCACCGAAGTTAACTATTTAGGTCAATTCAGTCACCCTAATCTGGTGAAGCTCATTGGATATTGCTGTGAGGACGAACACCGGTTATTGGTCTATGAATACATGGCAAGTGGGAGCTTGGAGAAACATCTTTTTCGCAGAGTGGGCTCAACATTGACTTGGTCAAAAAGAATGAAGATTGCTTTACATGCTGCGAGGGGGCTGGCTTTTCTTCATGGTGCAGAAAGACCTACTATATATCGTGACTTCAAGACTTCAAATATCTTGCTAGACGAGGATTTCAATGCGAAGCTTTCAGACTTTGGTCTTGCAAAGGATGGCCCAATGGGGGACCAAACCCATGTTTCAACACGAGTAATGGGCACATATGGATATGCTGCTCCCGAGTATGTCATGACTGGTCATTTGACAGCTCGAAGTGATGTATATGGTTTTGGGGTGGTACTACTTGAAATGCTTATTGGTAGAAGGGCATTAGACAAGAGCAGGCCTAGCCGAGAGCACAACTTGGTCGAGTGGGCCCGCCCGCTTCTGAATCATAATAAGAAACTTCTGAAAATTTTAGAACCAAAATTAGAGGGACAATATTCAAGTAAAACTGCATTAAAGGTAGCCCATTTAGCATACCAATGTCTTAGCCAAAACCCGAAAGGAAGACCTCTAATGAGCCAGGTTGTTGAAATTCTCGATAACTTTCAGTCAAGGGAGGAAAATGAGGAAGATCAAATGCTTCAAACTGGTGCTAGCAGTAGTATAACCCTTTACGAGGTTCCCAAGGGCAGCAATGACACTCCAACTTAA 1149 0.4456 MGICFSIEDKSNLSVSDSNAKPKPQGSVGHESAAPIVSINIKDLREGVGYSNVDSFTYEELRLATKHFRPDFILGEGGFGVVYKGVIDHGVRSGYKTTEVAIKELNREGFQGDREWLTEVNYLGQFSHPNLVKLIGYCCEDEHRLLVYEYMASGSLEKHLFRRVGSTLTWSKRMKIALHAARGLAFLHGAERPTIYRDFKTSNILLDEDFNAKLSDFGLAKDGPMGDQTHVSTRVMGTYGYAAPEYVMTGHLTARSDVYGFGVVLLEMLIGRRALDKSRPSREHNLVEWARPLLNHNKKLLKILEPKLEGQYSSKTALKVAHLAYQCLSQNPKGRPLMSQVVEILDNFQSREENEEDQMLQTGASSSITLYEVPKGSNDTPT 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03947 382 ProSiteProfiles Protein kinase domain profile. 68 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g03947 382 SUPERFAMILY Protein kinase-like (PK-like) 50 345 IPR011009 -
Vian1g03947 382 Pfam Protein tyrosine and serine/threonine kinase 74 345 IPR001245 GO:0004672|GO:0006468
Vian1g03947 382 MobiDBLite consensus disorder prediction 352 382 - -
Vian1g03947 382 CDD STKc_IRAK 74 348 - -
Vian1g03947 382 MobiDBLite consensus disorder prediction 359 382 - -
Vian1g03947 382 Gene3D Transferase(Phosphotransferase) domain 1 151 369 - -
Vian1g03947 382 PANTHER OS01G0588500 PROTEIN-RELATED 30 349 - -
Vian1g03947 382 ProSitePatterns Protein kinases ATP-binding region signature. 74 103 IPR017441 GO:0005524
Vian1g03947 382 Gene3D Phosphorylase Kinase; domain 1 44 150 - -
Vian1g03947 382 FunFam Serine/threonine-protein kinase BIK1 37 150 - -
Vian1g03947 382 FunFam Probable serine/threonine-protein kinase PBL8 151 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03947 Vian-Chr1 62548418 62553139 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03947 55 345 Glycoside Hydrolase AT3G07070 51.701 4.47e-100 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vian1g03947 PK_Tyr_Ser-Thr 1.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03947 - - gmx:100800465 709.523