Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03940 ATGCCTGAAAAGTCACACATCTGCACATGGCTAATTCATGTCTCACTAACACTTCTCACTGTAACAGCAACATCGTCATCGTTATCATCATCACACTGTGCCATGGCCGTCACGCCCTCCACCTCTCTCCTCTCCTTCCTCCAACGCCTCCAAAAAACCGCCTTCGAAGCGTTCGGCGGTACCGATTTCGATCCCAAGACCTACGTCGACGTGCCTCTTAAGTTCGCACTATCCGTCACCCAGGACGCGTTCCAGAAGCTTCCGCGTAACGCCAACGGCACCGTGCCGGCTGAAGATTTAAAGCGCTTTCTAGAAGCCTATTTCGGAGGTGCAGGGGACGATCTGGTGCACCTGACCCCACACGATTTCGTTCGCGAACCGGAGGGTTTCTTGCCCAAGGTCAAACACCCTCAGGTGCGGGCCTGGGCCTTGCAGGTCCATTGGCTTTGGAAAAACTTGACCCGGAAAGTATCCGATGCGGTGCAGGCGCACCCGGATTTGCATACGCTGCTCCCTCTCCCCGGTTCCGTTGTCATTCCCGGTTCGCGTTTTCGCGAGGTTTATTACTGGGATTCTTACTGGGTTATTAGGGGCCTGATCGCGAGTAAAATGCACGACACTGCTACTGCTATTGTGACCAACCTCATTTCCTTGATAGAACAATATGGATTTGTTCTTAATGGTGCTAGAGCATACTACAGTAACAGGAGCCAGCCTCCTCTTTTAAGCGCTATGATTTATGAGATATACCGTACCACCGGTGACGTGGAATTGGTTAAAAGATCTCTACCTGCACTAATCAAAGAGTATGAATTTTGGAATTCAGATATACACAAGGTGACCATTTTGGATGCTCAAGGTTGCACTCACACCTTAAATCGCTATAATGCAATGTGGGACAAACCCAGGCCAGAATCATCCATTAAGGACCAGGTATTTGCTTCCAACTTCTCGAGTGTTTCAGAAAAACAGCAGTTTTACCGTGACCTGGCTTCAGCTGCTGAATCAGGATGGGATTTCAGCACTAGATGGATGAGAAACCCGCCTAATTTCACAACATTGGCTACAACTTCCGTAATACCTGTTGATTTAAATGCATTTATACTCGGGATGGAACTTAATATTGCCTTCTTTGCAAAAGTTGTTGGAGATAATGGCACTGCTGAACGGTTCCTGGAAAATGCTGATCTTAGAAAGAAGGCAATGGACTCTGTTTTCTGGAATGCAAACATGAAACAATGGCTTGACTACTGGCTCGAAAATACATGTGAGGAGGTTCATGTTTGGAAAAACGGGCGCCAGAATAAAAATGTATTTGCTTCCAATTTTGTTCCTTTGTGGATGAAACCATTTTATTCAGATACTTCACTTGTGGCTAGTGTCGTTGAAAGTCTCAAAACTTCCAACCTTGTCCGTGCCGCTGGAGTTGCAACTTCTTTGACTGATTCAGGACAACAGTGGGACTTTCCAAATGGTTGGGCTCCGCTTCAACACATGCTAGTGGAAGGCCTTCTAAAATCTGGGTCGCAAGAAGCAAGGTCATTGGCTGAAGAAATTGCCACCAGATGGGTCACAAGCAATTATATCGTTTACAAGAAAACGGGCTTAATGCATGAAAAGCTTGACGTGGAGCATTGTGGAGAATTTGGAGGTGGAGGCGAATACGTGCCCCAGACTGGTTTTGGCTGGTCAAATGGTGTTGTGTTGGCATTCTTGGAGGAGTTTGGATGGCCTGAAGATCGGAACATAGAATGCTGA 1758 0.4704 MPEKSHICTWLIHVSLTLLTVTATSSSLSSSHCAMAVTPSTSLLSFLQRLQKTAFEAFGGTDFDPKTYVDVPLKFALSVTQDAFQKLPRNANGTVPAEDLKRFLEAYFGGAGDDLVHLTPHDFVREPEGFLPKVKHPQVRAWALQVHWLWKNLTRKVSDAVQAHPDLHTLLPLPGSVVIPGSRFREVYYWDSYWVIRGLIASKMHDTATAIVTNLISLIEQYGFVLNGARAYYSNRSQPPLLSAMIYEIYRTTGDVELVKRSLPALIKEYEFWNSDIHKVTILDAQGCTHTLNRYNAMWDKPRPESSIKDQVFASNFSSVSEKQQFYRDLASAAESGWDFSTRWMRNPPNFTTLATTSVIPVDLNAFILGMELNIAFFAKVVGDNGTAERFLENADLRKKAMDSVFWNANMKQWLDYWLENTCEEVHVWKNGRQNKNVFASNFVPLWMKPFYSDTSLVASVVESLKTSNLVRAAGVATSLTDSGQQWDFPNGWAPLQHMLVEGLLKSGSQEARSLAEEIATRWVTSNYIVYKKTGLMHEKLDVEHCGEFGGGGEYVPQTGFGWSNGVVLAFLEEFGWPEDRNIEC 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03940 585 Gene3D - 54 583 IPR012341 GO:0005975
Vian1g03940 585 PRINTS Glycosyl hydrolase family 37 signature 292 309 IPR001661 GO:0004555|GO:0005991
Vian1g03940 585 PRINTS Glycosyl hydrolase family 37 signature 327 344 IPR001661 GO:0004555|GO:0005991
Vian1g03940 585 PRINTS Glycosyl hydrolase family 37 signature 222 240 IPR001661 GO:0004555|GO:0005991
Vian1g03940 585 PRINTS Glycosyl hydrolase family 37 signature 359 376 IPR001661 GO:0004555|GO:0005991
Vian1g03940 585 PRINTS Glycosyl hydrolase family 37 signature 559 572 IPR001661 GO:0004555|GO:0005991
Vian1g03940 585 PRINTS Glycosyl hydrolase family 37 signature 402 418 IPR001661 GO:0004555|GO:0005991
Vian1g03940 585 PRINTS Glycosyl hydrolase family 37 signature 479 495 IPR001661 GO:0004555|GO:0005991
Vian1g03940 585 ProSiteProfiles EF-hand calcium-binding domain profile. 75 110 IPR002048 GO:0005509
Vian1g03940 585 SUPERFAMILY Six-hairpin glycosidases 63 578 IPR008928 GO:0005975
Vian1g03940 585 ProSitePatterns Trehalase signature 2. 486 495 IPR018232 GO:0004555|GO:0005991
Vian1g03940 585 PANTHER TREHALASE 28 583 IPR001661 GO:0004555|GO:0005991
Vian1g03940 585 Pfam Trehalase 63 576 IPR001661 GO:0004555|GO:0005991
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03940 Vian-Chr1 62428994 62433549 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03940 37 585 Trehalose Biosynthesis Gene Families AT4G24040 59.132 0.0 673
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03940 K01194 - gmx:547539 1014.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03940 1 62428994 62433549 Vian1g03940 1 62428994 62433549 ECH