Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03926 ATGGATGTGCCACAAACTCCAACCCCTTCTCCACATTTGTATCCACAAGAACTTCAACTTAAGCTTTACCAAGCCTTCATCTTTTCCATTCCCATACTCTTTTCCATCATTCTGGTTCTCTTGTTTTACTTGTTCTACCTCAAAAGGAGAGCTTCCTCTCTCTCATCACCACCTCTCCACATACTTACCAACACTGCCAATCCTCAAACAACATATCCTTACCCTTCACAACCTTGCCGATTAGATCTGACAGTGCAATTTCTTGACAAACTTCCAAGAATTTTATTTGATGAGGATTTTGGAACAAGAGATTCAGTATGTTGTGTTTGCCTTGGAGAATTTGAGCTGAAGGAAGAACTGCTACAAATTCCTTATTGCAAGCATGTGTTTCACATAAGCTGCATATGCAACTGGTTGCAATCAAACTCCACGTGTCCGCTTTGTAGATGTTGCATCACACCCTCCACCAAGTTCCTTAATACACCCTCACCTATTGTATCAGACTCACCACAGCAGGGTGGAATTTCAGGCTCTTCATCACACATCATGTCTATGCCTCAGCAACAAGAAGATCAAGTTGGTAATTCCACAAACACTACCATTTTCCAAGGAAATGGTGTATTACTTAGATGA 633 0.4123 MDVPQTPTPSPHLYPQELQLKLYQAFIFSIPILFSIILVLLFYLFYLKRRASSLSSPPLHILTNTANPQTTYPYPSQPCRLDLTVQFLDKLPRILFDEDFGTRDSVCCVCLGEFELKEELLQIPYCKHVFHISCICNWLQSNSTCPLCRCCITPSTKFLNTPSPIVSDSPQQGGISGSSSHIMSMPQQQEDQVGNSTNTTIFQGNGVLLR 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03926 210 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 155 IPR013083 -
Vian1g03926 210 SUPERFAMILY RING/U-box 85 160 - -
Vian1g03926 210 MobiDBLite consensus disorder prediction 162 210 - -
Vian1g03926 210 FunFam Putative E3 ubiquitin-protein ligase RHA4A isoform A 76 154 - -
Vian1g03926 210 SMART ring_2 107 148 IPR001841 -
Vian1g03926 210 CDD RING-H2_EL5-like 107 149 - -
Vian1g03926 210 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
Vian1g03926 210 Pfam Ring finger domain 107 149 IPR001841 -
Vian1g03926 210 PANTHER RING-H2 FINGER PROTEIN ATL16 8 192 IPR044600 GO:0016567|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03926 Vian-Chr1 62332216 62333921 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03926 3 205 C3H Transcription Factor Family AT4G10150 33.495 5.75e-32 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03926 K19039 - pvu:PHAVU_002G300500g 329.331