Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vian1g03917 | ATGGAGGCGGATTTCGTGACCAATGATATGCTCGCACTCACACACGATGCTTTTGATGCCAACGATAATGATGATGTAGCTATTGAAGGGGAAAGATGTGGAATATGTATGGATGTAGTTATTGACAGGGGAGTTCTGGATTGCTGTCAGCACTGGTTCTGCTTTGTATGCATTGACAACTGGGCTACCATCACTAATCTTTGCCCACTTTGCCAGAATGAGTTTCAGTTAATCACTTGTGTTCCAGTATATGATACCGTTGGAAACAACAAAGTTGAGGATGATTCACTCCTTAGAGATGATGATGATTGGTCCATTGAAGGGAAGAATAACACACTGCAATTTCCCTCATACTACATCGATGAAAATGCAGTTATTTGCTTGGATGGCGATGACTGCAAGGTTCGTAATGGGTTGGCTACTGTTGAAGGAGATTCTGATCTCGATACATCAATAGCATGTGATTCATGTGACATATGGTATCATGCATTCTGTGTGGGATTTGATACCGAAAGTACTTCAGAGAGTACATGGTTATGCCCCAGATGTGTAGCAGATGATGTTTCTAAGGGAGCAACTAATTCAAGGGAGAGGACAACCATGGAATGTAATGCAGACAATAGTAACAGTGATTGTCATGGTGAGGATTCCTTTTCAGGAAAAGTGTCTGTCTCTGTTGCTGATACAGGAGAAACGGCTGTTGTTGTCTCGATGGTTGACAGAGCAAAATGGGTTCCAGCAACAAGTGAGAAAAGCCTATTGCCTTTTGAAGTTGATGCGGATCCAATGACTGAATCATGTATTTTAATGTCTGACATAAATGATCAGCAAAGTGATGAACTGAGGACAAATTCATTACCAATCATGGAAGAAGAACTGGAATTGTCTTTATCAAACAATAGTGATTTAAAGAAAAGTGCCAGTGGAGCAATGATTGAACCCAATGGCTTTGATGGAACCGAGTTACTTGATGAATCCCTTACCAAAACTAGTCCATCTAGAATTAAATCTGATATGGGTCTTGATCTTGGTTTGTCAGTGGGCACTTATTTACCTGTTGATGATGCAGACAAGAGTGAACCGAAAGATCAAGCAACAGTTGTCCCATGCTTGACTTCAGAAAAATGTTTTTTGACAGGAGATGAAATTGAAGTCAATGCTTGTAAGGACAATGCCAGAGTGGCTGGTGGAAAGAGAAAGCATGCTGATTTCAGTAATGGGCAAGTTTATATAAAGGCTGAGGATGGAGATGCCAAACCTGAACTTCCTGATGAAGTTGTGGCAAAGAAAAGTAAAGCTACTGACAGCCAAATGAGTAACACTAATGACACAGCCAATGATCATCTTTTAGAAAATGCTCCGAAGCACCCTGCTTTAAAAGATTCTCCAACAAAGGCAACAGTTACACCAGATATAATGAATATAGTTAAAGGGACAGTCCGAAGGCTTTCCAAGGGACATACTAGTACTAATGCTTGTGACCAGTCATCTGAAAATAAAGGAAATATGGCTGGGTTGAGGGTTAAAAAGATCATGAAGAGAAATTCCGAGGATAGAGAATCATCCTTGTTAGTTCAAAATCTAAGGAAAGAAATTAGAGAAGCTGTCCGTAACAAATCCTCTATAAACTTCGAGGATAACCATTTTGATCCCAAGCTTCTTGAAGCATTTAGGACTGCTATAACAGGGCCTAAAACTGAACTTGTAAACAAGTTATCCCCTGCAGCTATAAAGGCAAAAAAGTCAATGTTGCAGAAAGGCAAAGTCCGTGAAAATTTAACAAAGAAAATTTTTGGTACTTCCAATGGAAGAAGAAAGCGTGCATGGGATAGGGACTGTGAAATTGAGTTCTGGAAATATCGTTGCATGAGAGCTACAAAGCCTGAAAAGATTGAAACTTTAAAATCAGTTCTTGATTTACTAAGAAAAGGTTCAGATGGTACAGAATCAAAGCAAGTTTCTGAATGTCAAACCAAGGATCCTATACTTTCTAGGTTGTATTTAGCAGATACATCTGTTTTCCCCCGGAAAGAGGATGTAAAACCTCTCTCTGTGCTTAAAACTGTGGCTAACTCTGAGCAAACCAAGCAAAACAACCCATCAGAGAAAGTACCAAATCTATCCATTGATAACAATACTATTAAAGCAACAGACGTAAACAATTTCTTATCAAAGATCAGTTTTGTTTCAAATGAAAAAAACGTAGACAAAAAGATTGTACATGGACCAGAAAGGACGCCAGTCTCATCAGTTGGTTCCAAAACTGGCACCAAGGAGTTAGGCCAAAAATCTGGTTGCATGAAGAATGATAAAAGAAAATGGGCCTTGGAGGTCCTTGCGAGGAAAACAGCCACAACCAGCGGAGGAAACACAGCAAATGGAAATCAGGAAGACAACTCAGTTTTTAAAGGAAATTATCCTTTACTTGCCCAACTGCCAAGTGATATGAGACCAGTATTGGCACCTTCTCGACACAATAAAATTCCTATATCAGTTAGGCAGACACAGCTTTACCGCCTGACAGAGCGCTTATTGAGGAACACAAATCTGACAGTGATTCGCAGAACTGGCATTACAGAATTAGCTGTTGCAGATGCAATTAATATTGAAAAAGAGGTTGCTGACAGATCAAATAGCAAGCTTGTGTATTTGAACCTTTGTTCGCAGGAGCTCTTGCATCGCACAAATAACACAAAATCCGATGTAGCCACAGATACAACTCCAGCAGCCTCATCAGCAATGCTTAATGATCGACAATCGGAACCAAATATGGAAGATCTTTCAGCTGACCCTGCAGTTGAAACGGCCTTGAAAAATGCTGGTCTGCTGTCTGACTCCCCACCTAGCAGTCCGCATGAGAACAGAGAAACATGTAATGGCGACATGTTGGGGTCCGATAATATACTTGAACTGGATTCGAATCCTGATCTGGATATTTATGGTGATTTTGAGTATGATTTGGAAGATGAGGATTATATTGGTGCTAGTGTTACACAGGTTTCAAAACCAAAACAAGAGCAAAATGAGTCAAAAGTGAAACTTGTTTTCTCCACCATGAACTTGAAAAAGTCAGATATCGCTTTGGATTGTGCTGACTGTGAGGGGCCTGAAAGAAATGAAGTGCCAGGAGAGGCATCCTGCTCGCGAAATTGTCACAATGATGCATTTCATATGGATAGGTCTTCTCTTTCTTCAGAGCTCCTACCCTTCGAGAGCGCTGTTGAGCCACTTGACAAAGAATTTGAAGAATTATTATACGGCCCTGACAAAGAACCACTAATAAAAAAATTTCCAGCTGGTGAATCAAGATCATTACATGGAGATGGCAAGACAGAAACTCTAAGCGTGGCCAATGACTACCATAATGATGAAGAACTTGCTTTGAATAATGCAATAAAAGCTTCAGAACAGGGGAAGGAGAATCTCACGGAAAAAAATTCTGATACTACCATCACCGACCAGTCTTCCAATATATCTGAAGCCGGTGAAAGTTTCCAACGGAAGGAAGGGAAATCTGATGTCATTGCTAAGCAGACTGACTCGGTAAATCATACAACTAAAAAGGTAGAAGCTTACATCAAGGAGCACATCAGACCACTGTGCAAGAGTGGTGTAATCACGGCTGACCAATACAGGTGGGCTGTTGCAAAAACAACTGAGAAGGTTATGAAGTATCATTGCAAAGCAAAGAATGCGAGTTTTCTCATAAAGGAAGGTGAGAAAGTAAAGAAACTTGCAGAGCAATATGCTGAAGCAGCCCAACAGACCAAAAAAAATTGA | 3780 | 0.4034 | MEADFVTNDMLALTHDAFDANDNDDVAIEGERCGICMDVVIDRGVLDCCQHWFCFVCIDNWATITNLCPLCQNEFQLITCVPVYDTVGNNKVEDDSLLRDDDDWSIEGKNNTLQFPSYYIDENAVICLDGDDCKVRNGLATVEGDSDLDTSIACDSCDIWYHAFCVGFDTESTSESTWLCPRCVADDVSKGATNSRERTTMECNADNSNSDCHGEDSFSGKVSVSVADTGETAVVVSMVDRAKWVPATSEKSLLPFEVDADPMTESCILMSDINDQQSDELRTNSLPIMEEELELSLSNNSDLKKSASGAMIEPNGFDGTELLDESLTKTSPSRIKSDMGLDLGLSVGTYLPVDDADKSEPKDQATVVPCLTSEKCFLTGDEIEVNACKDNARVAGGKRKHADFSNGQVYIKAEDGDAKPELPDEVVAKKSKATDSQMSNTNDTANDHLLENAPKHPALKDSPTKATVTPDIMNIVKGTVRRLSKGHTSTNACDQSSENKGNMAGLRVKKIMKRNSEDRESSLLVQNLRKEIREAVRNKSSINFEDNHFDPKLLEAFRTAITGPKTELVNKLSPAAIKAKKSMLQKGKVRENLTKKIFGTSNGRRKRAWDRDCEIEFWKYRCMRATKPEKIETLKSVLDLLRKGSDGTESKQVSECQTKDPILSRLYLADTSVFPRKEDVKPLSVLKTVANSEQTKQNNPSEKVPNLSIDNNTIKATDVNNFLSKISFVSNEKNVDKKIVHGPERTPVSSVGSKTGTKELGQKSGCMKNDKRKWALEVLARKTATTSGGNTANGNQEDNSVFKGNYPLLAQLPSDMRPVLAPSRHNKIPISVRQTQLYRLTERLLRNTNLTVIRRTGITELAVADAINIEKEVADRSNSKLVYLNLCSQELLHRTNNTKSDVATDTTPAASSAMLNDRQSEPNMEDLSADPAVETALKNAGLLSDSPPSSPHENRETCNGDMLGSDNILELDSNPDLDIYGDFEYDLEDEDYIGASVTQVSKPKQEQNESKVKLVFSTMNLKKSDIALDCADCEGPERNEVPGEASCSRNCHNDAFHMDRSSLSSELLPFESAVEPLDKEFEELLYGPDKEPLIKKFPAGESRSLHGDGKTETLSVANDYHNDEELALNNAIKASEQGKENLTEKNSDTTITDQSSNISEAGESFQRKEGKSDVIAKQTDSVNHTTKKVEAYIKEHIRPLCKSGVITADQYRWAVAKTTEKVMKYHCKAKNASFLIKEGEKVKKLAEQYAEAAQQTKKN | 1259 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vian1g03917 | 1259 | SMART | PHD_3 | 132 | 184 | IPR001965 | - | |
Vian1g03917 | 1259 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 14 | 96 | IPR013083 | - | |
Vian1g03917 | 1259 | SUPERFAMILY | RING/U-box | 25 | 78 | - | - | |
Vian1g03917 | 1259 | SUPERFAMILY | FYVE/PHD zinc finger | 147 | 186 | IPR011011 | - | |
Vian1g03917 | 1259 | SMART | ring_2 | 124 | 183 | IPR001841 | - | |
Vian1g03917 | 1259 | SMART | ring_2 | 33 | 71 | IPR001841 | - | |
Vian1g03917 | 1259 | MobiDBLite | consensus disorder prediction | 432 | 448 | - | - | |
Vian1g03917 | 1259 | MobiDBLite | consensus disorder prediction | 898 | 925 | - | - | |
Vian1g03917 | 1259 | Coils | Coil | 525 | 545 | - | - | |
Vian1g03917 | 1259 | MobiDBLite | consensus disorder prediction | 1144 | 1163 | - | - | |
Vian1g03917 | 1259 | ProSiteProfiles | Zinc finger PHD-type profile. | 65 | 186 | IPR019787 | - | |
Vian1g03917 | 1259 | MobiDBLite | consensus disorder prediction | 898 | 922 | - | - | |
Vian1g03917 | 1259 | PANTHER | RING FINGER PROTEIN 41, 151 | 115 | 1249 | - | - | |
Vian1g03917 | 1259 | MobiDBLite | consensus disorder prediction | 1135 | 1172 | - | - | |
Vian1g03917 | 1259 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 125 | 189 | IPR013083 | - | |
Vian1g03917 | 1259 | MobiDBLite | consensus disorder prediction | 742 | 765 | - | - | |
Vian1g03917 | 1259 | ProSitePatterns | Zinc finger RING-type signature. | 49 | 58 | IPR017907 | - | |
Vian1g03917 | 1259 | ProSiteProfiles | Zinc finger RING-type profile. | 33 | 72 | IPR001841 | - | |
Vian1g03917 | 1259 | MobiDBLite | consensus disorder prediction | 748 | 762 | - | - | |
Vian1g03917 | 1259 | MobiDBLite | consensus disorder prediction | 428 | 465 | - | - | |
Vian1g03917 | 1259 | Pfam | Zinc finger, C3HC4 type (RING finger) | 33 | 71 | IPR018957 | GO:0046872 | |
Vian1g03917 | 1259 | Pfam | PHD-finger | 147 | 184 | IPR019787 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vian1g03917 | Vian-Chr1 | 62264371 | 62277215 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vian1g03917 | 33 | 120 | C3H Transcription Factor Family | AT3G58030 | 32.632 | 1.84e-07 | 53.1 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | PHD | Vian1g03917 | PHD | 1.7e-08 | CL0390 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vian1g03917 | - | - | gmx:100808102 | 1996.48 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vian1g03917 | 1 | 62264371 | 62277215 | Vian1g03917 | 1 | 62264371 | 62277215 | ECH |