Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03899 ATGGCGAGTGAATGGAGCTGGGAGCAGAACACACTCATCAATGAGCTAATTCAAGGGATGGAGTTAGCAAGGAAGTTGAAGGAAGACTTGAGACTGCCGTATTCAGTTGACTCAAAAGACATGCTGCTGCAGAGGATACTATCTTCTTATGAAAAGGCTCTACTGATTCTAAGATGCAATGCATCAACTTCCGACTTGCAGGCCACGAGTCAAGCACCTGCAGCTTTGTTACCGGAGTCCCCAATATCAGTCCATGGAAGTCCTCTGAGTGAGGATCTTGATGGGGCCATCAAGGATCACCAAGAAACTCAACATGATTCAAAGAAAAGAAAGATAACGCCCAAATGGATGGATCATGTAAGAGTGAGCTGCGAGAGTGGTCTTGAAGGACCACAAGAAGATGGCTACAACTGGAGAAAATATGGTCAGAAAGACATCCTCGGAGCAAAATATCCCAGAAGTTACTATAGGTGCACCTTCCGCAACACACAGGGCTGTTGGGCAACGAAGCAAGTGCAGAGATCAGATGAAGATCCCACAATATTTGACATAACCTACAGAGGAAAGCATACCTGTTCTCAAGGAAACAACGCCGTTTTGCCACCTAAGTCACCAGACAAACAAGAGAAGACACACAGACATAACATTGACATGCACCATGCACAGGCATCACAAGAAAGCCTTACAAAGTTCAGAAACATCTTGTCTGTCAACACAGATAAACTAGACAATGGAGATATGGCATATCCTTTCACTTTCCCTTCGACTTCATCTGGATGCATGAAACCATACAACCACAGCTTGATTCCTGGGACCCTAGAGAATGAGTACTTCTTGAGCGATCAATACCAAACGCACCTGTTATCTCCAACAACACCGGAATCAAACTATCTCCCATCCCCAACTTTCCAGATGAATGAGTTTGACGGAATCTACAACAAGCCTTATTCAGACTCAGATATTAATGAGATCATTTCCACCAACACATCAGCAACCAATTCTCCAATTCCCGATTTCAATTTCTCACTTGATCCAGTGGAAATTGACCCGAATTTCCCTTTCAACACCCCAGGATTTTTCTCCTGA 1086 0.4411 MASEWSWEQNTLINELIQGMELARKLKEDLRLPYSVDSKDMLLQRILSSYEKALLILRCNASTSDLQATSQAPAALLPESPISVHGSPLSEDLDGAIKDHQETQHDSKKRKITPKWMDHVRVSCESGLEGPQEDGYNWRKYGQKDILGAKYPRSYYRCTFRNTQGCWATKQVQRSDEDPTIFDITYRGKHTCSQGNNAVLPPKSPDKQEKTHRHNIDMHHAQASQESLTKFRNILSVNTDKLDNGDMAYPFTFPSTSSGCMKPYNHSLIPGTLENEYFLSDQYQTHLLSPTTPESNYLPSPTFQMNEFDGIYNKPYSDSDINEIISTNTSATNSPIPDFNFSLDPVEIDPNFPFNTPGFFS 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03899 361 ProSiteProfiles WRKY domain profile. 127 190 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian1g03899 361 FunFam WRKY transcription factor 53 118 195 - -
Vian1g03899 361 MobiDBLite consensus disorder prediction 193 213 - -
Vian1g03899 361 Gene3D WRKY domain 118 195 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian1g03899 361 Pfam WRKY DNA -binding domain 133 192 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian1g03899 361 SMART WRKY_cls 132 194 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian1g03899 361 SUPERFAMILY WRKY DNA-binding domain 131 194 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian1g03899 361 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 6 275 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03899 Vian-Chr1 62116745 62118061 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03899 6 271 WRKY Transcription Factor Family AT4G23810 44.291 1.74e-67 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vian1g03899 WRKY 8.3e-27 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00210 10 1849563 1850783 Vian1g03899 1 62116745 62118061 PCT