Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03888 ATGAGCTTGAAAATGCAGCTTGGTTTGTTGATGTTTGGGACCATTGGGTCGATGCTGTTGGAATCTGTGAGTTGTAAAAATGTTCATGTCGTGGGAGACCAATTGGGCTGGAACATCCCCAGCCGACAAAATTTCTTCGATGATTGGGCTAAGAAAAAAACCTTCGTCGTTGGTGACCAGCTTGTTTTCCAGTACCACCCTGGGCTGAACACAGTGGTGAAGGTAAATAAAGAGGATTACGAGAATTGCACAACGAAAAATGTTATTGAGACGTATTTCAATGGAAACTCTTCTGTTACTTTGGAGGAAGCTGCTGACTATTATTTCTTCTCTTCTGTTGGGAAGCATTGCGAGGCTGGCGTAAAGCTTCACGTCACTGTTACTAATCCCCTCAAATCCTCTCAGTAA 408 0.4338 MSLKMQLGLLMFGTIGSMLLESVSCKNVHVVGDQLGWNIPSRQNFFDDWAKKKTFVVGDQLVFQYHPGLNTVVKVNKEDYENCTTKNVIETYFNGNSSVTLEEAADYYFFSSVGKHCEAGVKLHVTVTNPLKSSQ 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03888 135 Gene3D - 27 135 IPR008972 -
Vian1g03888 135 FunFam Cupredoxin superfamily protein 26 133 - -
Vian1g03888 135 Pfam Plastocyanin-like domain 37 120 IPR003245 GO:0009055
Vian1g03888 135 PANTHER BLUE COPPER PROTEIN 28 127 IPR039391 GO:0009055
Vian1g03888 135 ProSiteProfiles Phytocyanin domain profile. 27 129 IPR003245 GO:0009055
Vian1g03888 135 SUPERFAMILY Cupredoxins 28 128 IPR008972 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03888 Vian-Chr1 62031341 62031869 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03888 9 134 Phytocyanin Superfamily AT4G31840 37.008 2.37e-25 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03888 - - vra:106766651 224.942