Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03887 ATGGCTTCGTCTGCCATCAAGCAAACACAACACCTTAACCGCACCAAACTCCTCGTCCAAGAACACACCCTTCTGAAAAACCATCACCATCCCAAACTCGTGCGGATACGTGTCACCGACGCCGACGCCACGGACTCCTCCAGCGACGACGAGCAGCCCTCCGTGCCCTCCACGCGCCGCAGAGTCAAAAGCTTCGTCAACGAGATTACCATCCACGGCGCCCGAGTTAAAGTTGTTTCCAGGAAAAGAAAGGTGAAGTCTGGCGGCGCTCCGGCGCTCCGGCGGCGAACTGGGGCGAGGAAGTTCCGCGGAGTGAGGCAGCGGCCGTGGGGGAAATGGGCGGCTGAGATAAGGGACCCGTCGCGCCGCGTGAGGCTGTGGCTGGGCACTTACGACACCGCCGAGGAAGCCGCCATTGTGTACGACAACGCCGCCATTCAGCTGCGCGGCGCCGACGCGCTCACCAATTTCATAACGCCCCCGGCGGAGGACAGAAAAACCGGTTACTGCTCCGGCGAGGAGTCTCCCAGTGAGGAGCTGCGTTCCCCCACTTCGGTTCTTCGGTGCTGTTGGGCGTCCGAGGAAGCTGAATCGGTAACCGCAAACGACGCGGTTGGTCCGGCGAGCGAGTGCGAACATTCATGGTTTTCAGAGGATAGTAAGTTGAAAGATGAGTCAGTGTTTGGTATTCCTGAGGACGTTGTATTCGGATTTGAAAGCACTTTGGATATGTTTGACGAGTGTGATAACAACGTTGCAGAGAGCAGTGGTATATTCTTGGGCGATGATTTTGATTTGAGTGGATGCTTTGTTAGTGAGAAAGAGAATTTAGATTTGGGTTTTGGTTTTGGGTTTACGAGTTGGCAAAGAGAGTGCGATAATTTCCAAGACATTGGGGATTTGTTTGTTTGGGATCCTCTTGTTGCTCTTTGA 933 0.5477 MASSAIKQTQHLNRTKLLVQEHTLLKNHHHPKLVRIRVTDADATDSSSDDEQPSVPSTRRRVKSFVNEITIHGARVKVVSRKRKVKSGGAPALRRRTGARKFRGVRQRPWGKWAAEIRDPSRRVRLWLGTYDTAEEAAIVYDNAAIQLRGADALTNFITPPAEDRKTGYCSGEESPSEELRSPTSVLRCCWASEEAESVTANDAVGPASECEHSWFSEDSKLKDESVFGIPEDVVFGFESTLDMFDECDNNVAESSGIFLGDDFDLSGCFVSEKENLDLGFGFGFTSWQRECDNFQDIGDLFVWDPLVAL 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03887 310 CDD AP2 101 157 IPR001471 GO:0003700|GO:0006355
Vian1g03887 310 SUPERFAMILY DNA-binding domain 101 157 IPR016177 GO:0003677
Vian1g03887 310 PRINTS Ethylene responsive element binding protein signature 124 140 IPR001471 GO:0003700|GO:0006355
Vian1g03887 310 PRINTS Ethylene responsive element binding protein signature 102 113 IPR001471 GO:0003700|GO:0006355
Vian1g03887 310 SMART rav1_2 101 164 IPR001471 GO:0003700|GO:0006355
Vian1g03887 310 MobiDBLite consensus disorder prediction 39 59 - -
Vian1g03887 310 Pfam AP2 domain 101 150 IPR001471 GO:0003700|GO:0006355
Vian1g03887 310 Gene3D AP2/ERF domain 100 159 IPR036955 GO:0003700|GO:0006355
Vian1g03887 310 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 30 209 - -
Vian1g03887 310 FunFam Ethylene-responsive transcription factor 2 100 159 - -
Vian1g03887 310 ProSiteProfiles AP2/ERF domain profile. 101 158 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03887 Vian-Chr1 62022387 62023319 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03887 1 310 AP2-EREBP Transcription Factor Family AT4G23750 40.395 6.64e-57 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vian1g03887 AP2 3.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03887 - - gmx:100813992 429.869
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00216 10 1902380 1903348 Vian1g03887 1 62022387 62023319 PCT