Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03886 ATGGACATTCTACCCATTTTATGTTCCATTTCCCTTTTGTGTTTGGTTATGTGGGAAGGAAGTGGTGAGCCTCTTGAAGATAAGGAGGCGTTGCTTGAGTTTGTGAACAAGTTCCCTCCTTCCAGACCTCTGAATTGGAATGAGAGTTCCCCCATGTGTGCTTCTTGGACTGGTGTGACTTGCAATGAAGACAGGTCCAGAGTAATTGCAATTAGGTTGCCAGGGGTTGGATTTCATGGCACTATTCCACCTGACACTATTAGTCGCCTCGCAGCACTGCAAACTTTGAGCCTCAGATCCAATGTGATATCTGGGCCTTTCCCTTCTGATTTTTCCAATCTAAAGAACTTGTCTTTCCTCTACCTTCAGTTCAACAACTTGTCTGGGCCTTTGCCTGATTTCTCGTCCTGGAAGAACCTCACTGTTGTCAATTTGTCCAATAACCATTTCAATGGCAGCATTCCTGTCTCCCTTAACACCTTGCCTCAGCTTTCTGGTTTGAACCTTGCAAACAACTCTCTTTCTGGGGAAATTCCTGACCTCAACTTGTCCAGATTGCAGGTGCTGAATCTGTCCAACAACAATTTGCAGGGAACTGTGCCCAAATCTCTGTTGAGGTTTCCTGAGTCTGCATTCTCTGGGAATAACATTTCCTTTGGAACTTTTCCCCCAGTTTCTCCGGCACCTCAGCCCGCTTTTGAGCCGGCTTTGAAGTCTAGGAGGCGTAGAAAGCTCAGTGAGGCGGCGCTGTTGGGAGTGGTTGTTGCTGCTGCTGTTTTAGGCCTCCTGGCTTTTGTTTCTTTGACTTTTGTGTGCTGCTCAAGAAGAGGTGAGGAAGATGAGGAAACCTTCGGTGGGAAGTTGCACAAGGGAGAAATGTCTCCTGAGAAAGCTGTCTCAAGGAATCAGGATGCAAATAATAAGCTGGTTTTCTTTGAGGGATGTAATTATGCCTTTGATTTGGAGGATTTGTTGAGGGCTTCCGCTGAGGTTCTGGGAAAGGGAACGTTTGGAACTGCCTACAAGGCAATACTAGAAGATGCTACCACGGTTGTTGTGAAGAGATTAAAGGAGGTAGCTGCTGGCAAGAAGGATTTTGAGCAGCACATGGAGATTGTTGGAAGTCTTAAGCATGAGAATGTTGTTGAGCTCAAGGCATATTATTATTCCAAAGATGAGAAACTCATGGTATATGATTATCACAGTCAGGGGAGCATAGCTTCCATTTTGCATGCCAAGAGAGGAGAGGAGAGGGTGCCTTTAGATTGGGATACAAGGTTGAAAATAGCCTTAGGTGCTGCAAGAGGCATTGCTCGTATCCATGTTGAGAACGGTGGCAAGCTGGTACATGGCAACATCAAATCCTCAAACATCTTTCTCAACACCAAACATTATGGATGTGTGTCTGACCTTGGTCTGGCAACCATATCAAGCTCACTGGCCTTACCAATATCACGAGCAGCCGGTTACCGGGCACCGGAAGTGACAGACACCAGAAAAGCAGCACAGCCCTCGGATGTTTACAGTTTTGGTGTGGTGCTGCTAGAGCTTCTGACTGGGAAATCCCCTATCCACACTACTGGTGGTGATGAGATTATCCACCTTGTGAGGTGGGTTCATTCAGTTGTGCGTGAGGAATGGACAGCTGAAGTGTTTGACCTGGAACTGATGAGATATCCAAACATAGAAGAAGAGATGGTGGAAATGTTACAGATAGCCATGTCATGTGTGGTGAGGATGCCGGATCAAAGGCCTAGGATGTCTGAAGTTGTCAAGATGATTGAAAATGTGAGGCAGATTGATGCAGACCCTTATTCATCGTCTGGGAACCAAGCTGAACAACTCAAGTTGTCTCAACGTGACAGTGGTAACTCTCCTTCCACTCCCTCCTACTTGCCCAGAGGAAGTGAATGA 1914 0.4639 MDILPILCSISLLCLVMWEGSGEPLEDKEALLEFVNKFPPSRPLNWNESSPMCASWTGVTCNEDRSRVIAIRLPGVGFHGTIPPDTISRLAALQTLSLRSNVISGPFPSDFSNLKNLSFLYLQFNNLSGPLPDFSSWKNLTVVNLSNNHFNGSIPVSLNTLPQLSGLNLANNSLSGEIPDLNLSRLQVLNLSNNNLQGTVPKSLLRFPESAFSGNNISFGTFPPVSPAPQPAFEPALKSRRRRKLSEAALLGVVVAAAVLGLLAFVSLTFVCCSRRGEEDEETFGGKLHKGEMSPEKAVSRNQDANNKLVFFEGCNYAFDLEDLLRASAEVLGKGTFGTAYKAILEDATTVVVKRLKEVAAGKKDFEQHMEIVGSLKHENVVELKAYYYSKDEKLMVYDYHSQGSIASILHAKRGEERVPLDWDTRLKIALGAARGIARIHVENGGKLVHGNIKSSNIFLNTKHYGCVSDLGLATISSSLALPISRAAGYRAPEVTDTRKAAQPSDVYSFGVVLLELLTGKSPIHTTGGDEIIHLVRWVHSVVREEWTAEVFDLELMRYPNIEEEMVEMLQIAMSCVVRMPDQRPRMSEVVKMIENVRQIDADPYSSSGNQAEQLKLSQRDSGNSPSTPSYLPRGSE 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03886 637 Gene3D Transferase(Phosphotransferase) domain 1 402 620 - -
Vian1g03886 637 MobiDBLite consensus disorder prediction 602 637 - -
Vian1g03886 637 Pfam Protein kinase domain 329 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g03886 637 SUPERFAMILY L domain-like 37 207 - -
Vian1g03886 637 ProSitePatterns Protein kinases ATP-binding region signature. 332 363 IPR017441 GO:0005524
Vian1g03886 637 FunFam pollen receptor-like kinase 1 295 400 - -
Vian1g03886 637 Gene3D Ribonuclease Inhibitor 136 225 IPR032675 -
Vian1g03886 637 Pfam Leucine rich repeat 81 127 IPR001611 GO:0005515
Vian1g03886 637 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 401 607 - -
Vian1g03886 637 Gene3D Phosphorylase Kinase; domain 1 292 400 - -
Vian1g03886 637 Gene3D Ribonuclease Inhibitor 26 135 IPR032675 -
Vian1g03886 637 SUPERFAMILY Protein kinase-like (PK-like) 330 594 IPR011009 -
Vian1g03886 637 Pfam Leucine rich repeat N-terminal domain 26 62 IPR013210 -
Vian1g03886 637 PANTHER OS05G0588300 PROTEIN 7 606 - -
Vian1g03886 637 FunFam Probable inactive receptor kinase RLK902 25 182 - -
Vian1g03886 637 ProSiteProfiles Protein kinase domain profile. 326 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03886 Vian-Chr1 62007239 62010170 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03886 16 630 Receptor kinase-like Gene Family AT4G23740 65.231 0.0 786
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vian1g03886 Pkinase 6.2e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03886 - - gmx:100804799 1096.65