Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03877 ATGGAGAGGTACACTAGTCAGCGGTGGAAACCTACTGATGATCAGGTCAAAATGATGACCAATATCTTCAACCACGGAGTCACACATCCCAGCAGAGCCCAAGTCGTCGAGATTACATCTCGACTCAGGGCCTTCGGAGAAGTCAGTGAATATAATGTACACTGCTGGTTCAACAATCATGGAAACCGGGTCAGGCGTTGGCAAGCGGAATTAGATCCCACTGGCACCGTATTTTCTCAGCTGCCGCTCAGCAAACCTCTTCCTTCTTCATTCTCCATACTAGAACGTGACTTCTCTGCTGGTGCTGGTCCAAGCTGCTGCCATGGCTTTGCTGGAACGTGGCCTCCGTCTGCTGCTGGACTTCTTCTTGCGCGTTGTTGGATGTTGGGGCTGTGTGCAACCAGCTCGGACGTGAAGACTGTGCGCTCTTCCCTCAAGGACGTGGCTTCTCCAAACTGGACACCTGCTGGACGGAGCTGTTGTGACAGAGAAGCTAGCTGTTCACCGTGA 510 0.5255 MERYTSQRWKPTDDQVKMMTNIFNHGVTHPSRAQVVEITSRLRAFGEVSEYNVHCWFNNHGNRVRRWQAELDPTGTVFSQLPLSKPLPSSFSILERDFSAGAGPSCCHGFAGTWPPSAAGLLLARCWMLGLCATSSDVKTVRSSLKDVASPNWTPAGRSCCDREASCSP 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03877 169 PANTHER WUSCHEL-RELATED HOMEOBOX 13 6 70 IPR044559 GO:0003700
Vian1g03877 169 Gene3D - 6 71 - -
Vian1g03877 169 Pfam Homeodomain 6 66 IPR001356 GO:0003677
Vian1g03877 169 ProSiteProfiles 'Homeobox' domain profile. 2 67 IPR001356 GO:0003677
Vian1g03877 169 SUPERFAMILY Homeodomain-like 7 68 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03877 Vian-Chr1 61920360 61925741 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03877 5 70 Wox Gene Family AT5G59340 42.424 3.23e-15 69.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vian1g03877 Homeodomain 1e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03877 - - var:108346427 355.14