Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03872 ATGGAACAGAAAAGCATTCTGATATCGGCTTTGGGTGTCGGGGTGGGTGTTGGAGTGGGCATTGGATTGGCTTCTGGACAAGGCGTTGGCAAATGGGTAGCCAACACTTCTTCCTCAAACACTATCACTGCTGAGAAGATGGAGCAGGAAATGCTCAGACAAGTTGTTGATGGAAGAGAAAGCAACGTCACTTTCGAGAAATTCCCTTATTATCTCAGTGAGCAGACAAGGGTTTTGCTGACAAGTGTGGCTTATGTCCATTTAAAGCATGCTGATGTTTCTAAATATACACGGAATCTTGCTCCTGCAAGCAGAACTATTCTGCTCTCAGGGCCAGCAGAGCTTTACCAACAGATGCTTGCCAAGGCTTTAGCTCATTATTTTGAGGCCAAGTTACTGCTGTTAGATTTAACCGACTTTTCATTGAAGATTCAGAGTAAATATGGTTCTTCCAACAAAGAATCTTCTTTCAAAAGATCCACTTCAGAGTCTACTTTGGAACGGCTATCTGATCTATTTGGGTCATTTTCAATCTTTTCACAAAGGCAAGAACTTAAAGGAAAAATGCACAGGCCTAGCAGTGTAATAGACCTCCAATCAATGGGTGCCGAAGCATCTTGTAATCCTCCACCACTCCGTAGGAATGCTTCTTCCTCTTCAAACATAAGCGGCCTTGCTTCCCAAACCAATGCTACAAATTCAGCTTCTCTGAAGCGCGCAACCAGCTGGTCTTTTGACGAAAAGCTTCTTATACAGTCTCTTTACAAGAAAATGTTGAAAAAACTATCTGGGTCCATTTTGATTCTTGGTTCACGAGTTATAGATTGTGGCAATGAATATGAAGAGGTGAATGAGAAGCTTGATTCACTCTTCCCATACACCATAGAAATCAGGCCACCAGAAGATGAGTCACATCTTGTCAGCTGGAAGTCTCAATTGGAAGAGGATATGAAGATGATACAAGTTAAGGATAACAAAATTCATATCATGGAAGTCCTTGCAGCAAACGATCTCGATTGTGATGACCTAGATTCCATATGTGTGGAAGACACAATGGTTCTCAGTAACTATATAGAAGAGATCATTGTGTCAGCAATTTCGTATCATTTGATGAAAAACAAAGACCCTGAATACAGAAATGGCAAGCTCGCCATCTCTTCCAATAGCTTGTCCCATGCATTGAGTATATTCCACAAGGGCAAATCCAGTAGAGGAGACACATTAAAATTAGAAGATCAAGCTGTAAAATCAGAGAAACAAAGCGAGGAAGGAACTGATATGAAATCAGAAGCAAAGTCTGAAAATGCTGCTCCTGTAAAAAAGGCTGAAGCAGAAATATCAACTTCGGTGGGGAAGGCGGATGGTGAAAAATCAGTTCCTGCTCCCAAAGCCCCTGGAGTTCCTCCTGATAATGAGTTTGAGAAGCGAATAAGGCCTGAGGTAATACCAGCAAATGAGATTAATGTTACATTCTCTGACATTGGTGCCTTGGATGAGACCAAAGAATCCCTTCAAGAACTAGTGATGCTTCCTCTTCGAAGGCCGGACCTTTTCACCGGGGGCCTTCTAAAGCCTTGTAGAGGAATATTGCTATTTGGGCCTCCTGGCACTGGGAAGACCATGCTGGCAAAGGCCATTGCAAAGGAGGCTGGAGCAAGTTTCATCAATGTTTCCATGTCTACCATCACTTCTAAATGGTTTGGTGAAGATGAGAAGAATGTTCGCGCTCTATTCACACTTGCTGCCAAGGTCTCCCCAACTATTATATTCGTGGATGAGGTTGATAGCATGCTTGGTCAACGAACCAGAGTAGGGGAGCATGAAGCCATGAGGAAAATAAAGAATGAATTTATGACCCATTGGGATGGACTTTTGACAAAGCCAGGAGAGAGAATCCTTGTTCTTGCTGCAACCAATAGGCCATTTGATCTCGATGAAGCTATTATTAGGCGATTTGAAAGAAGAATTATGGTAGGACTACCGTCTGTGGAAAACAGGGAAAAGATTTTGAAGACTCTTTTAGCAAAAGAGAATATGGACAGCGAACTTGATCTTAAGGAACTTTCAACTATGACAGAAGGATATACTGGAAGTGATCTTAAGAACTTGTGCACAACTGCTGCTTATCGGCCCGTTAGAGAGCTAATTCAGCAAGAGAGACTAAAGAGTTTGGATAAAAAGCAGAAAGCTGCCAAGAGACAGAATGAAGATGTCCAAGATAGTGAAGGTGGACAAGAAATTGAGCAAGAAATAGTTATTGCCCTTAGACCGTTGAATATGCAGGATTTCAAAGAGGCCAAGAATCAGGTTGCTGCAAGCTTTGCAGCTGAAGGGGCTGGAATGGGTGAGTTGAAACAATGGAATGATTTGTATGGAGAAGGGGGTTCAAGGAAGCAGCAGCAGTTGTCTTACTTCCTATGA 2421 0.4242 MEQKSILISALGVGVGVGVGIGLASGQGVGKWVANTSSSNTITAEKMEQEMLRQVVDGRESNVTFEKFPYYLSEQTRVLLTSVAYVHLKHADVSKYTRNLAPASRTILLSGPAELYQQMLAKALAHYFEAKLLLLDLTDFSLKIQSKYGSSNKESSFKRSTSESTLERLSDLFGSFSIFSQRQELKGKMHRPSSVIDLQSMGAEASCNPPPLRRNASSSSNISGLASQTNATNSASLKRATSWSFDEKLLIQSLYKKMLKKLSGSILILGSRVIDCGNEYEEVNEKLDSLFPYTIEIRPPEDESHLVSWKSQLEEDMKMIQVKDNKIHIMEVLAANDLDCDDLDSICVEDTMVLSNYIEEIIVSAISYHLMKNKDPEYRNGKLAISSNSLSHALSIFHKGKSSRGDTLKLEDQAVKSEKQSEEGTDMKSEAKSENAAPVKKAEAEISTSVGKADGEKSVPAPKAPGVPPDNEFEKRIRPEVIPANEINVTFSDIGALDETKESLQELVMLPLRRPDLFTGGLLKPCRGILLFGPPGTGKTMLAKAIAKEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTKPGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSVENREKILKTLLAKENMDSELDLKELSTMTEGYTGSDLKNLCTTAAYRPVRELIQQERLKSLDKKQKAAKRQNEDVQDSEGGQEIEQEIVIALRPLNMQDFKEAKNQVAASFAAEGAGMGELKQWNDLYGEGGSRKQQQLSYFL 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03872 806 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 488 726 IPR027417 -
Vian1g03872 806 Coils Coil 721 741 - -
Vian1g03872 806 ProSitePatterns AAA-protein family signature. 632 651 IPR003960 GO:0005524|GO:0016887
Vian1g03872 806 Pfam ATPase family associated with various cellular activities (AAA) 529 659 IPR003959 GO:0005524|GO:0016887
Vian1g03872 806 Gene3D - 488 660 IPR027417 -
Vian1g03872 806 Pfam AAA+ lid domain 683 720 IPR041569 -
Vian1g03872 806 Gene3D - 661 740 - -
Vian1g03872 806 MobiDBLite consensus disorder prediction 204 227 - -
Vian1g03872 806 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 45 805 - -
Vian1g03872 806 MobiDBLite consensus disorder prediction 407 439 - -
Vian1g03872 806 SMART AAA_5 525 662 IPR003593 GO:0016887
Vian1g03872 806 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 488 663 - -
Vian1g03872 806 MobiDBLite consensus disorder prediction 407 473 - -
Vian1g03872 806 MobiDBLite consensus disorder prediction 211 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03872 Vian-Chr1 61856399 61861624 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03872 489 739 Calmodulin-binding Proteins AT3G56690 38.583 5.55e-44 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03872 - - gmx:100807464 1351.65