Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03865 ATGGATGAGAATTTGCTCGACGATATTATCCGCCGGCTCGTTGCGGCAAAGAACGGTAGAGCAACGAAGCAGGTGCAGCTTACGGAGGCGGAAATTCGACAACTCTGCGCTTCCTCTAAAGAGATCTTTCTCAGTCAACCCAATCTTCTCGAACTCGAGGCTCCAATTAAGATTTGTGGAGATGTTCATGGCCAATACTCAGACCTTTTAAGGCTGTTTGAATACGGGGGATACCCTCCAGAAGCAAATTATTTATTTCTTGGAGATTATGTTGATCGTGGTAAGCAAAGCATAGAGACAATATGCTTACTCCTTGCATACAAGGTCAAATTCAAGGAGAATTTCTTTCTTCTCAGGGGTAACCATGAGTGTGCCTCCATCAACCGAATATATGGTTTCTATGATGAGTGTAAGAGGAGATTTAATGTTCGCATCTGGAAGACATTTACTGAATGCTTTAATTGTCTACCTGTTGCTGCTCTGATAGATGAGAAGATTCTTTGCATGCATGGTGGACTATCACCTGATCTTAAACATTTGGATCAGATACGGAATCTTGCTCGTCCTATCGATGTGCCAGATCACGGTCTTCTCTGTGATCTTCTATGGGCTGATCCTGATAAAGATCTTGATGGGTGGGGAGAAAATGATCGAGGTGTGTCATTTACATTTGGGGCTGACAAGGTTGTTGAATTTCTTGAACAGCATGATCTTGACCTAATTTGCAGAGCTCATCAGGTTGTAGAGGATGGATATGAGTTTTTTGCCAAGCGTCAGTTGGTGACTATATTCTCCGCCCCCAATTACTGTGGTGAATTTGATAATGCTGGTGCTATGATGAGTGTGGATGACACTTTGACATGCTCTTTTCAAATACTTAAATCTTCTGAAAAGAAAGTGAAAGGTGGATTTGGCAACAACACATCAAGACCGGGAACTCCACCTCATAAGGGTGGGAAGAATTAA 966 0.4255 MDENLLDDIIRRLVAAKNGRATKQVQLTEAEIRQLCASSKEIFLSQPNLLELEAPIKICGDVHGQYSDLLRLFEYGGYPPEANYLFLGDYVDRGKQSIETICLLLAYKVKFKENFFLLRGNHECASINRIYGFYDECKRRFNVRIWKTFTECFNCLPVAALIDEKILCMHGGLSPDLKHLDQIRNLARPIDVPDHGLLCDLLWADPDKDLDGWGENDRGVSFTFGADKVVEFLEQHDLDLICRAHQVVEDGYEFFAKRQLVTIFSAPNYCGEFDNAGAMMSVDDTLTCSFQILKSSEKKVKGGFGNNTSRPGTPPHKGGKN 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03865 321 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 11 299 - -
Vian1g03865 321 FunFam Serine/threonine-protein phosphatase 1 304 - -
Vian1g03865 321 Pfam Serine-threonine protein phosphatase N-terminal domain 6 53 IPR031675 -
Vian1g03865 321 ProSitePatterns Serine/threonine specific protein phosphatases signature. 118 123 IPR006186 GO:0016787
Vian1g03865 321 Gene3D - 1 305 IPR029052 -
Vian1g03865 321 SMART pp2a_7 27 297 IPR006186 GO:0016787
Vian1g03865 321 SUPERFAMILY Metallo-dependent phosphatases 22 298 IPR029052 -
Vian1g03865 321 PRINTS Serine/threonine phosphatase family signature 117 141 IPR006186 GO:0016787
Vian1g03865 321 PRINTS Serine/threonine phosphatase family signature 259 275 IPR006186 GO:0016787
Vian1g03865 321 PRINTS Serine/threonine phosphatase family signature 84 111 IPR006186 GO:0016787
Vian1g03865 321 PRINTS Serine/threonine phosphatase family signature 237 257 IPR006186 GO:0016787
Vian1g03865 321 PRINTS Serine/threonine phosphatase family signature 151 177 IPR006186 GO:0016787
Vian1g03865 321 PRINTS Serine/threonine phosphatase family signature 180 207 IPR006186 GO:0016787
Vian1g03865 321 PRINTS Serine/threonine phosphatase family signature 55 82 IPR006186 GO:0016787
Vian1g03865 321 CDD MPP_PP1_PPKL 6 294 - -
Vian1g03865 321 MobiDBLite consensus disorder prediction 300 321 - -
Vian1g03865 321 Pfam Calcineurin-like phosphoesterase 55 247 IPR004843 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03865 Vian-Chr1 61767088 61770509 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03865 56 240 Calmodulin-binding Proteins AT5G63870 30.455 5.40e-26 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03865 K06269 - gmx:100783178 648.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03865 1 61767088 61770509 Vian1g03865 1 61767088 61770509 ECH