Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03857 ATGGGTCACCATTCTTGCTGCAACCAACAGAAGGTTAAAAGAGGACTTTGGTCTCCTGAGGAAGATGAAAAACTCATCAGATACATTACAACTCATGGATACGGCTGCTGGAGTGAAGTTCCAGAAAAAGCTGGGCTTCAAAGGTGTGGGAAGAGTTGTCGTTTGAGATGGATTAATTATTTGAGACCTGATATTAGGAGAGGAAGGTTTACACCTGAGGAGGAAAAGTTAATTATAAGCCTTCACGGGGTCGTAGGCAACAGATGGGCTCACATTGCAAGCCACTTGCCAGGTCGAACGGACAATGAAATAAAGAACTATTGGAACTCGTGGATAAAAAAGAAAATAAGAAAGACTTCACTGTCTTCAACCATTATTGCACAAAGTATCGATCACAATTCTTCCCAGTTCAGCTACAGTTCCAATCTACTTGGCCATTTTTCTTCCAACCTGGATAATCCACAGACAAAACCACCATTTCAAGAAACCTTGTTTTCCTCTACATGCCCTCTGTTCATGTTTGACACACCTTCGCTGGAAGGACCAGCAACAGACTGCAACAGTGTGCGACCTGAAAATTTTCAAGATGCAGTGGGGTTGAGCACTGAAACGTGGAACCTGAGCCATCATCAGGTTCAGGCACTTCCTCCTCTAACAGTGACTGTGGGCTTGGACACCACAAATTATTTGCCACCATTGATAGAGAACGTGGACAACATGGTCCCGATTGAGGTACAACGTTGTCCCATGGACGAGCAAGGAGATATAGCACTAGAGTGCTTGCAGAGGCAAGGTTTAAATGAATGGGTGGAAACGCAGCAGCAATGTCCTAACTTTCTCTTTTGGGACAGTGTTGAAGGACATATTGGTGGGGAAGAACTAGCCACAAATGTGGAAGCAAACACACTTTCTCCTTTTCCTTCTTCTTTGAATTTAGGGTTTATAGACAAGAACGCAGCAAAGATAACAGTGTCGACGCCGAGCTCTGTTTCCCAGCCTCCGTATCTTCATCATCCACCTTCGCACACAATGATTATCCCGGAGAAGAACCGTAAGGAGATCTGCAAGTACCTCTTCCAAGAGGGAGTTTGCTATGCGAAGAAGGACTTCAATTTGGCGAAGCACCCTGAGATTGACGTGCCTAATCTGCAGGTGATTAAGCTGATGCAGAGTTTCAAATCTCGCGAGTACGTGAGGGAGACCTTTGCTTGGATGCATTACTACTGGTTCCTCACCAACGATGGCATAGAGTTTCTCAGAACTTATCTTAACCTTCCTTCCGAAATTGTCCCTGCCACTTTGAAGAAACAGGCCAAACCACCTGGCAGGCCCTTTGGCGGCCCATCCGGTGATCGCCCTAGGGGTCCACCACGCTTTGACGGCGAGCGTAGATTTGGTGGTGATCGTGATGGGTACCGTGGAGGTCCCCGAGGCGGTGGGGAATTTGGAGGAGACAAGGGAGGAGCTCCTGCTGATTACAGACCCACTTTTGGGGGTCCTGGCGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCGCCAACCAGTTCCAATCTTCCATAA 1569 0.4736 MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHGVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRKTSLSSTIIAQSIDHNSSQFSYSSNLLGHFSSNLDNPQTKPPFQETLFSSTCPLFMFDTPSLEGPATDCNSVRPENFQDAVGLSTETWNLSHHQVQALPPLTVTVGLDTTNYLPPLIENVDNMVPIEVQRCPMDEQGDIALECLQRQGLNEWVETQQQCPNFLFWDSVEGHIGGEELATNVEANTLSPFPSSLNLGFIDKNAAKITVSTPSSVSQPPYLHHPPSHTMIIPEKNRKEICKYLFQEGVCYAKKDFNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWFLTNDGIEFLRTYLNLPSEIVPATLKKQAKPPGRPFGGPSGDRPRGPPRFDGERRFGGDRDGYRGGPRGGGEFGGDKGGAPADYRPTFGGPGGRPGFGRGSGGFGAPTSSNLP 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03857 522 FunFam Transcription factor MYB26 68 137 - -
Vian1g03857 522 Gene3D - 6 66 - -
Vian1g03857 522 CDD SANT 69 112 IPR001005 -
Vian1g03857 522 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Vian1g03857 522 FunFam 40S ribosomal protein S10 344 447 - -
Vian1g03857 522 FunFam MYB transcription factor 6 66 - -
Vian1g03857 522 Gene3D - 344 447 IPR036388 -
Vian1g03857 522 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Vian1g03857 522 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vian1g03857 522 CDD SANT 17 61 IPR001005 -
Vian1g03857 522 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vian1g03857 522 Pfam Plectin/S10 domain 346 437 IPR005326 -
Vian1g03857 522 PANTHER MYB DOMAIN PROTEIN 55 1 157 - -
Vian1g03857 522 SMART sant 66 114 IPR001005 -
Vian1g03857 522 SMART sant 13 63 IPR001005 -
Vian1g03857 522 Gene3D - 68 137 - -
Vian1g03857 522 MobiDBLite consensus disorder prediction 434 522 - -
Vian1g03857 522 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vian1g03857 522 MobiDBLite consensus disorder prediction 455 475 - -
Vian1g03857 522 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vian1g03857 522 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03857 Vian-Chr1 61648270 61656667 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03857 1 313 MYB Transcription Factor Family AT1G63910 51.075 5.92e-99 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vian1g03857 S10_plectin 1.2e-42 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03857 K09422 K02947 gmx:100803556 701.049