Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03853 ATGATGGCTCGACAATTGTGTGAAGACAAATCCAAGGACATGGCTTCATCGACTGGTCTGTTCTACCCTGATGTGTCATCAAACATCCCAACTCTCCAACCCCATCTGATGAACCACATCCAAGGCTTTGTGACCGACCCAGAGATGTTCAACCTCACCACTGGCATGGAGATGATAGGGTTTTCCAAGAATCTTCATCCACACAGTGAAAGCAACGGGGTCATGTGGAAAAGTTTCTTCGGGAAACCAAGTCAACACGCGGGTCCTTCCTCTTCCAAAACTATGAACGAGTCTTCTTGCAATTTTTATAACCAGCACGAGTATAGTAATAAGCAAGACTTCACATCAGGGATTTCAGAAACAAGTAGCGAAAATTTGATAGTCGGTGGTGCTCATGATTCTGCCCCGTGGCAAGAGAACAGGCTAATGCTTGATGATTCTTCCTTAAGGTGCGTGTTCCCCTGTGAAGGTAACGAAAGGCCTAGTCAAGGTCTTTCACTCTCTCTCAGTTCAACCAACCCTTCGAGTATTGGGTTGCAATCTTTCGAGCTAAGACAAACAAACCATCATCAGCATCTTTCTGATTTTGTTTCGAGAGACGGGTATTTTGGAAAATCGGTCAATGCTCAACAACAGCAACAAGTGTTGCAAGACGGGTACATGAGTCCTAACAAAGCTGCAAATATTTATCAGGGACATTTTCTAATCAAGAACTCCAAGTTCTTGGTGCCTGCACAGCTCCTTCTGAACGAGTTTTGTAGTCTTGGAACAAAGGAAAATGATGTGCAAAAGCAGAAGCAGTCTCTAAAGAACAAGCCGTGGGAAGAGGGTAACAACGGTGGTGGTTCCTCAAAGAACCATTCTCTTGGCTCTCTAGAGTTCGTGGAGTTGCAGAAGAGAAAGACAAGGCTGCTATCGATGCTGGAAGAGGTTGATAGAAGATACAAACATTACTGTAACCAAATGAAGGCTGTGGTCTCCTCCTTTGAAGCAGTGGCGGGTAACGGAGCAGCCACAGTTTATTCGGCTTTGGCTTTGAGAGCCATGTCTCGCCATTTTAGGTGCCTGAAAGATGGAATCATGGAACAGATTCAAACCACCAGAAAAGCTATGGGAGAGAAAGACCCCGTTGCACCAGGAACAACAAGGGGCGAAACACCGAGGCTTAAAATCATTGACCAATCACTGAGACAACAAAGGGCCTTTCAACAAATTAGCATGATGGAAACCCATCCCTGGAGACCTCAACGTGGCCTTCCCGAACGATCCGTTTCAGTTCTTCGGGCTTGGCTTTTCGAGCACTTTCTTCACCCGTACCCAAGTGATGTCGATAAACACATCCTAGCCCGCCAAACCGGTCTCTCCAGAAGTCAGGTTTCGAATTGGTTTATTAACGCCAGGGTGAGGCTGTGGAAGCCGATGGTGGAGGAGATGTACTTGGAAGAAGAGAAGGAGCAACAGAACGACGTCGCATCGTCGGAGGGAGGAGGCACCAATCCCGAGGGTGATCAGAACGCGGCACGCCAGGATCAGAAGCCGACGCAGGCTCGGCTCCTCCGAATTGACTCGGAGATGTCGTCCATGGTGAGCAACACGGAGCAGAAAAACGACAGCAAGAGCGGAAAAAGCGTCCAAAATGACGAGCAAATGAATGAGAGCAACCATCCCGCGGAGGCGTTCGGGGCGGTGGAGCTTGACTTTTCGTCATACGCGCAGCAGTCCTCCGGCGTGGTCGGTTACGATGGTGACAGCGGGAACGAGAGGTTCCAGGGTGGCGGTGGGGGCGTGTCGTTGACGCTAGGGTTACAGCAGCAGGGTGAAAGCGGGGTGAGTTTAGCGTTCCCGCCAGCGACTCAAAGCTCGATGTTCTACCCACGGGACCATATAGAAGAGTGTCAAACAGTCGAGTACTCTCTTTTGGACGGCGAAGGACAAAACATGCCGTATAGGAATCTCATGGGGACACAATTGCTCCATGATTTGGTATGA 1989 0.4907 MMARQLCEDKSKDMASSTGLFYPDVSSNIPTLQPHLMNHIQGFVTDPEMFNLTTGMEMIGFSKNLHPHSESNGVMWKSFFGKPSQHAGPSSSKTMNESSCNFYNQHEYSNKQDFTSGISETSSENLIVGGAHDSAPWQENRLMLDDSSLRCVFPCEGNERPSQGLSLSLSSTNPSSIGLQSFELRQTNHHQHLSDFVSRDGYFGKSVNAQQQQQVLQDGYMSPNKAANIYQGHFLIKNSKFLVPAQLLLNEFCSLGTKENDVQKQKQSLKNKPWEEGNNGGGSSKNHSLGSLEFVELQKRKTRLLSMLEEVDRRYKHYCNQMKAVVSSFEAVAGNGAATVYSALALRAMSRHFRCLKDGIMEQIQTTRKAMGEKDPVAPGTTRGETPRLKIIDQSLRQQRAFQQISMMETHPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEEMYLEEEKEQQNDVASSEGGGTNPEGDQNAARQDQKPTQARLLRIDSEMSSMVSNTEQKNDSKSGKSVQNDEQMNESNHPAEAFGAVELDFSSYAQQSSGVVGYDGDSGNERFQGGGGGVSLTLGLQQQGESGVSLAFPPATQSSMFYPRDHIEECQTVEYSLLDGEGQNMPYRNLMGTQLLHDLV 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03853 662 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 134 514 - -
Vian1g03853 662 MobiDBLite consensus disorder prediction 272 287 - -
Vian1g03853 662 Gene3D - 416 478 - -
Vian1g03853 662 ProSiteProfiles 'Homeobox' domain profile. 410 473 IPR001356 GO:0003677
Vian1g03853 662 FunFam BEL1-like homeodomain protein 4 416 478 - -
Vian1g03853 662 Pfam Homeobox KN domain 430 469 IPR008422 GO:0003677|GO:0006355
Vian1g03853 662 MobiDBLite consensus disorder prediction 527 553 - -
Vian1g03853 662 MobiDBLite consensus disorder prediction 527 554 - -
Vian1g03853 662 MobiDBLite consensus disorder prediction 481 514 - -
Vian1g03853 662 MobiDBLite consensus disorder prediction 262 287 - -
Vian1g03853 662 CDD homeodomain 413 474 IPR001356 GO:0003677
Vian1g03853 662 Pfam Associated with HOX 236 360 IPR006563 -
Vian1g03853 662 MobiDBLite consensus disorder prediction 490 512 - -
Vian1g03853 662 SUPERFAMILY Homeodomain-like 414 479 IPR009057 -
Vian1g03853 662 SMART prehox3 230 362 IPR006563 -
Vian1g03853 662 SMART HOX_1 413 477 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03853 Vian-Chr1 61598308 61601452 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03853 139 662 Homeobox Transcription Factor Family AT5G41410 48.427 1.98e-141 424
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vian1g03853 POX 1.6e-46 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03853 - - gmx:100792789 991.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00250 10 2164964 2167983 Vian1g03853 1 61598308 61601452 PCT