Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03852 ATGGCAGCGACAACTACAACAACTTTCCTCAAACTTCAAAACCAGCCCACCAAGCCCAAACGACGCAAGTATCGAGAAACGACAATCTCCGCTGCCGCTTCTCCAAACCACACCCAAACGATTCCTCATCGTCGCACTCCACAATCCCCTATATGTTCCCAAACCCCATCCAAGCCCCAACCCGAACCCGAACCACCTGCATTGCCCGAATCACCCTCCACCCACACGATCCGCTTCTCCCCGGGTCGCTTCTCCCCCATAATGGACTTCACCCACTCCTCCCCCACCGCCAACGGCCACCACCCCTCCCACCCACAGCCCCACGACTTCCCCTCCAGCTTCTCCAAGTTTAACTCCGCCCTCACCGCGGGCCTTTTGAACCCAATGTCCCCCCCGCCAGACAAGACCCGATCCAGCCCCACGCTCTTCGAAATGATGGCCAGCGAGCCCGATGTCCACCACAGGCCCACCACCCACATCCCGCCCACCACCGTCGCCGCCGCCGCCGCTGCGTCGTCGCTGCACAAACCCCAGATTCTCGATCGCCACGCCCTCATGATGCAGCGGATTTCGGACCTCTTGGGGTCCCGCAGCCCCGGGAACCAGTTCAACGATGCCGCTTCCAGCGATATCAAGCTCACGCTCAGCTCCAAAGACGGAATCAGTGTCTCCATGAACGTGCATCGCCAAATCCTCGTCGCGCACAGTAGGTTCTTCTCGGTGAAGCTCTCCGATCGCTGGACCAAGCAGCAGCAGCAGCGCTCGCCGGTTCCCTACGAAGTTGAAATCGCCGATTGCGACGATGTGGAGGTTTACATCGAGACCTTGAGGTTGATGTATTGTAAGGATCTTAGGAAGAAGCTCATGAGAGAGGATGTCTCCAGAGTTCTCGGTATCTTAAAGGTTTCAGCTGCCATTGGGTTTGATGCTGGGGTTTTGTCTTGTTTGGAGTACCTGGAAGCGGCACCTTGGGCCGAGGATGAGGAAGAGAAGGTGGCATCGCTCCTTTCTGAGCTTCGTCTTGAAGCGGTTGGCGCAGGGGAGGTTTTGAAGAGGGTTTCAACTGATGCTGCTGCCAATGGAAATGAAGAGGGGAGTGATAATGAGGAGGTTCTTCTTAAGCTTATTCGTGTGGTTCTTGAAGGTAAGGATGAGAAGGCCCGGCGTGAGATGAAAGGGTTAGTGTCGAAGATGCTGCATGAAAATTCTTCTCAGAATGATCTTCGGAAGGAGTCGCTGTACTTAGCATGTGATGACTGTCTGCAGTTACTTCGTGACCACTTTTTGCAGGCTGCGGGTTCGCATTTGCAGGATGTGAGTCAAATTGCAAGACAAGCAGACAATCTGCATTGGATTTTGGATATTTTAGTTGACAGACAGATTGCTGAGGATTTCCTGAAAACATGGGCCTCTCAAGCAGATTTGGCTGAAGCTCATTCTAAGGTGCCAGCAGTTCACAGGTTTGAGGTTAGCAGAGTTACAGCAAGGTTGTTTGTTGGGATTGGGAAAGGACAGTTGTTGGCTTCTAAAGATGTCAGGTGTTTGCTTCTAAAAACTTGGTTGGTGCCCTTTTATGATGACTTTGGTTGGATGAGGAGGGCATCCAAGGGGCTTGATAGGCACCTAATTGAGGATGGTCTTAGTAATACTATTCTTACTCTGCCACTCTCCTGGCAACAGGATATTTTGCTTGCTTGGTTTGATCGTTTCTTGAATTCCGGTGAAGATTGCCCAAATATTCAAAGAGGGTTTGAAGTTTGGTGGAGAAGGGCTTTCTGGAAGAGGAATGGAGAGCAAGAACGGACAAGACAATTACGAATTACAACTACATCAGTTGAGAACCCTTGA 1848 0.52 MAATTTTTFLKLQNQPTKPKRRKYRETTISAAASPNHTQTIPHRRTPQSPICSQTPSKPQPEPEPPALPESPSTHTIRFSPGRFSPIMDFTHSSPTANGHHPSHPQPHDFPSSFSKFNSALTAGLLNPMSPPPDKTRSSPTLFEMMASEPDVHHRPTTHIPPTTVAAAAAASSLHKPQILDRHALMMQRISDLLGSRSPGNQFNDAASSDIKLTLSSKDGISVSMNVHRQILVAHSRFFSVKLSDRWTKQQQQRSPVPYEVEIADCDDVEVYIETLRLMYCKDLRKKLMREDVSRVLGILKVSAAIGFDAGVLSCLEYLEAAPWAEDEEEKVASLLSELRLEAVGAGEVLKRVSTDAAANGNEEGSDNEEVLLKLIRVVLEGKDEKARREMKGLVSKMLHENSSQNDLRKESLYLACDDCLQLLRDHFLQAAGSHLQDVSQIARQADNLHWILDILVDRQIAEDFLKTWASQADLAEAHSKVPAVHRFEVSRVTARLFVGIGKGQLLASKDVRCLLLKTWLVPFYDDFGWMRRASKGLDRHLIEDGLSNTILTLPLSWQQDILLAWFDRFLNSGEDCPNIQRGFEVWWRRAFWKRNGEQERTRQLRITTTSVENP 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03852 615 ProSiteProfiles BTB domain profile. 209 288 IPR000210 GO:0005515
Vian1g03852 615 MobiDBLite consensus disorder prediction 1 15 - -
Vian1g03852 615 MobiDBLite consensus disorder prediction 1 116 - -
Vian1g03852 615 Gene3D Potassium Channel Kv1.1; Chain A 190 322 IPR011333 -
Vian1g03852 615 MobiDBLite consensus disorder prediction 87 101 - -
Vian1g03852 615 MobiDBLite consensus disorder prediction 54 70 - -
Vian1g03852 615 Pfam BTB/POZ domain 202 297 IPR000210 GO:0005515
Vian1g03852 615 PANTHER OSJNBA0011J08.25 PROTEIN-RELATED 192 601 IPR038920 -
Vian1g03852 615 MobiDBLite consensus disorder prediction 29 53 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03852 Vian-Chr1 61579532 61581845 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Vian1g03852 BTB 0.00025 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03852 - - ccaj:109800730 1017.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03852 1 61579532 61581845 Vian1g03852 1 61579532 61581845 ECH
Vian1g03852 1 61579532 61581845 Vian4g01075 4 17251404 17253577 PCT