Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03851 ATGTCGCGGCGCACTCGCGATGATGGAAGGACATGGTCTGAAGGTTCTCGCGACGATGTCCATGGTAGTGCGAGGTTTCTGCAATTTTGTGCTTTGATTGACAAAGAAGATGATGGGGTGTGTCGCGATTCTGATGGTGGTGGCTGTGGAGGCTCGCGACTCTGCAACGGCACTAACAGTGTAGATGAACAGCGGTGCTCTACCCTCATGGGTTTCCCTGTGGGCTACACGGAGCTTCTCTTCCCGAAGCTTCTCCTCCAACTCCTCTCCGTCTTGGGCTTCCTCCGGAGGCTCATTTGCACCGTCCTCCGTTTCATGGGCCTCCACGATTTCCTCGAGCCCGACATTGCTTGGCCCGAAGCCCACACCGGAATGCCAGAATTCGAATCCGTCTCCGCCACGTTTATCCGGGAAATCCTCCCCGTAGTTAAGTTCCACGACCTCCTCGACCCACCCGAAACCTGCGCCGTCTGTCTCACGGAGTTCGAGAAAAACGATGAGATCAGACGGCTGGCCAACTGTCGACACATATTCCACCGAGGATGTTTGGACCGTTGGATGGGTTACGATCAGAAAACGTGCCCTCTTTGCAGAACACCCTTCATACCGGACGATATGCAAGGTACTTTCATTGAAAGACTCTGGGCTGCGTCTGGGATCTCTGAACAGCCTCTTGTTCCTGCTTCCTAG 690 0.5464 MSRRTRDDGRTWSEGSRDDVHGSARFLQFCALIDKEDDGVCRDSDGGGCGGSRLCNGTNSVDEQRCSTLMGFPVGYTELLFPKLLLQLLSVLGFLRRLICTVLRFMGLHDFLEPDIAWPEAHTGMPEFESVSATFIREILPVVKFHDLLDPPETCAVCLTEFEKNDEIRRLANCRHIFHRGCLDRWMGYDQKTCPLCRTPFIPDDMQGTFIERLWAASGISEQPLVPAS 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03851 229 ProSiteProfiles Zinc finger RING-type profile. 155 198 IPR001841 -
Vian1g03851 229 Pfam Ring finger domain 154 198 IPR001841 -
Vian1g03851 229 PANTHER RING ZINC FINGER PROTEIN-RELATED 96 215 - -
Vian1g03851 229 SMART ring_2 155 197 IPR001841 -
Vian1g03851 229 SUPERFAMILY RING/U-box 136 204 - -
Vian1g03851 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 149 201 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03851 Vian-Chr1 61562849 61566711 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03851 70 225 C3H Transcription Factor Family AT1G63840 56.790 6.70e-57 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03851 K16281 - gmx:100789020 255.758