Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03849 ATGTCTTCTGATCTCTACTCTTACGACACCACTTTCCACACACATTCAAACTCAGACTTTCTCTCCTCTGATGGAGTTGGAGACCTTCCTTTTCTCTCTGACTCTTTTCCTTTCTTCCCCAATTCTCCCTCTAACGTAGCTCAGGACAATTCCAATTCCAATTCCAATTCTCTCCCTTCTCTAGACCCTTTTTCCCCATCTTTTTTCTCTTTCTCCCCTCCAAGTTCCCACTTGGAAAGTCTCAGCCTTTACCATGCCAACCGCGTCCAGCCGCTGTCAAATGGCCAAAACTTGGCGAACGAGTTTGCAACTTTCTCAGCTTTTGATGCCTCTGAAGTGAAGACTGAGGAAGCCCAATTGGGTGTTGACTGTGTCTACGCTCAACAACTCCTTCCTCACAGTTACAGTGGTGCTGAAAATTTTTCCAGGTACATGCACAGAAGCTTCAGCAGCAACTCCTTTGAAGCAAAACCAGGTTTTCTGTCACAACCTTACACTGATACTCTTGTGGACTCTCCCAAATTTCAAAGGCATGATTTGAGCTCCCCTGAAGACACTCTCTTCACCGGACAAATGAGAAGGGTTTGTAGCACCGGAGATTTGCAGAACATGAAGGAAAATCGCATGTCTCCAACGGAGGCACCGTTGTTGGAGGAATCCAACTTCAAAGTAGGGCGTTACAGTGCGGAAGAGAGGAAAGAAAGAATCTCGAAATACAGAGCCAAGAGAACCCAGAGGAATTTCAACAAGACAATTAAGTATGCATGCCGAAAGACTCTAGCAGATAATCGACCACGCATACGTGGCAGATTCGCCCGCAACGACGAAGCCATCGACAATCCCAAGGCTTCATGTTCAACACGAGACGAAGATGATGTTGGTTTCTGGATTGAAGAATTACGATTGCATGAAGAACAAGACGATGTAACAGTGGGAGCAGAACAATATTTGGGAAGGTATGGAGCAACTCAGTTTCAGTATGGTGGCTTTTGA 993 0.4572 MSSDLYSYDTTFHTHSNSDFLSSDGVGDLPFLSDSFPFFPNSPSNVAQDNSNSNSNSLPSLDPFSPSFFSFSPPSSHLESLSLYHANRVQPLSNGQNLANEFATFSAFDASEVKTEEAQLGVDCVYAQQLLPHSYSGAENFSRYMHRSFSSNSFEAKPGFLSQPYTDTLVDSPKFQRHDLSSPEDTLFTGQMRRVCSTGDLQNMKENRMSPTEAPLLEESNFKVGRYSAEERKERISKYRAKRTQRNFNKTIKYACRKTLADNRPRIRGRFARNDEAIDNPKASCSTRDEDDVGFWIEELRLHEEQDDVTVGAEQYLGRYGATQFQYGGF 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03849 330 Pfam CCT motif 232 274 IPR010402 GO:0005515
Vian1g03849 330 ProSiteProfiles CCT domain profile. 232 274 IPR010402 GO:0005515
Vian1g03849 330 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 47 286 IPR045281 GO:0009909
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03849 Vian-Chr1 61537557 61539353 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03849 228 297 C2C2-CO-like Transcription Factor Family AT5G15850 41.429 1.89e-10 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vian1g03849 CCT 9.6e-18 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03849 - - gmx:102665661 447.588