Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03846 ATGGGCGGTTGCTGCTGCTGTTGTTCTTCTAAGGAGACTGTGTTGAGCGCTCCACCTGCCTACTATTATTATCCAAGAGCACCAGAGGAGCATGTTCCTCTATCATCTCACCAGGGTGCCGCTTCTTCTTTCTCTGGGCGACTCTTGGTTGATACTAATCTAGATACGTCATCTCCTGATACTTATAGACCTCCTCCTGCTCCTATCCCTTTCAATGTTACGTTTGGTACCACTCAAACTCCACCTGCAGCTCAAGAAATTCGTAGTGACAAGCATAATGCACCCTTGCTTTCTACAGATTCTAGTGCAATTCAAGAACCAGTATCTGGAGACAATCATGGGACCCCAGTTAAGATGGAAGAGCTGAAGGAATCAGAATGCAAAGTTCAGGCTGATCTAGAGATAGATTCTGCTAAGGGTTCTGAAATTGAACTTGCAAAGCCTGGAAAACCTGTAATTTTAGTAGAAGAGGAGGATACATGCCCAATTTGTTTAGAAGAATATGATGCAGAGAATCCAAAACTCGCAACAAATTGTGACCATCATTTTCACCTTGCATGCATTCTGGAATGGATGGAAAGAAGTGAAACTTGCCCTGTGTGCGATCAGGATTTGGTTTTCAACCCTCCCATTGAATAA 639 0.4366 MGGCCCCCSSKETVLSAPPAYYYYPRAPEEHVPLSSHQGAASSFSGRLLVDTNLDTSSPDTYRPPPAPIPFNVTFGTTQTPPAAQEIRSDKHNAPLLSTDSSAIQEPVSGDNHGTPVKMEELKESECKVQADLEIDSAKGSEIELAKPGKPVILVEEEDTCPICLEEYDAENPKLATNCDHHFHLACILEWMERSETCPVCDQDLVFNPPIE 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03846 212 ProSiteProfiles Zinc finger RING-type profile. 161 202 IPR001841 -
Vian1g03846 212 FunFam Putative E3 ubiquitin-protein ligase RHB1A 138 206 - -
Vian1g03846 212 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 207 IPR013083 -
Vian1g03846 212 SUPERFAMILY RING/U-box 154 208 - -
Vian1g03846 212 SMART ring_2 161 201 IPR001841 -
Vian1g03846 212 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 39 208 - -
Vian1g03846 212 Pfam Ring finger domain 159 201 IPR001841 -
Vian1g03846 212 CDD RING-H2_AIRP1-like 157 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03846 Vian-Chr1 61504996 61506603 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03846 1 212 C3H Transcription Factor Family AT5G41350 51.163 1.79e-69 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03846 - - vra:106765380 405.601