Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03844 ATGGAAGAATGGTCAACATTCTCAAATGGGCCTTCTTTAGATTCCCTTGGAGTTGAAACAGCTGGTGAATTTCCTGGAAATGGTTGTTGTCCTGGAGATGGCCATGTTGATAATGGTGCTCCTCATGGTAAACTTACACAAAAATGCCTGTTCTATCAACTTTACCCTCTTTATCTGAAGGATAATTGTTCCCAAGCTGGTGCTCGGCCTTTGCTGGTTTTGGTTGATGGACAACAGCTCGATTTGTATAAACTCTTCTCCCTTGTGAAGGAAAGGGGTGGATATGCTGAGGTGTCGAAAAATGGATTGTGGGGTTCCGTGACCAAGGGATTGGGTTTGAACCTTGAAGTTTACTCGCCAGTGAAATTAGTGTACGATAAGTATCTGAATGATTTTGAAAGGTGGCTGAAGAAAATTTTTGAAGAGAAGATTTTAAAAAATGGGAATAATGGGTGTGATTGGGGTTTGGAGTGGTTGCCATTGGATATAGAGAAAGAGTTCAAAGGCCTGTTATGTCTAAATCCAAAGAAGAAAGCCGATGATGAACTTTTCAAGTCAAAATCAAATAAAAAAAAGAAAAACACTGATTTGGTTAACCACAAGAATGGTAATAATCTATTGGACACCAAAGATCAAAATAATAAATCCGAGGATGTCCAACACATTGAAGGTGACGATAATGAAAAATCCAGTAATGGAATTAAGGACAATCCTGCAACCTTGGGTGCAGAATGTGCTGACAAGGAATGTAACCTTCTCAAACGCAAGCGGGATGCATTCTCCGGCATGCTAAACTGGATGAAGAATATTGCAAAACATCCTCTTGATCCTTTAACTCGACCGATACCAAAACCATCAAAGTGGAAGGAGCATAAAGGCCGGGGCTTTTTTGGTCAATTTCTTAAGGCAAGAGAGGTTCTGTCACTAAGAAATCATGAACCAAACAGTGGATTGTCTTCTTTGCAGAAACAGAAGATACAACCTGCCATGTTCGAGGATCATGTTGCCCTTGATTGCCGTGCTACAGGAAAATCGAGATGCAGTGAAAGGCTGCCTTCGTCTGTTAAATCTCGGTCATGCTCTTGCTGCAATCCATGTTCTCACAATGGAAATACATTGGCAGGTTCACATAATAAGGTGGCAGAAGAAAATTGTCCTCATGAGAAAACAACTGAAACTAAAGATGTATTGACTGCAAAGGCAATGGATGAATCATCTGGGGAAGAGTCTATTAAAAAGCAAGTATCTGTAGGTCCTCGTTTTCAAGCTGAAATCCCTGAATGGACTGGTGTAGCTTCTGATAGTGACTCTAAATGGCTGGGAACACGACTATGGTCTTTGAAACATGACACAGAACCTGCTACTGAAACAGATCTTGGAAGGGGAAGACAAGAGAAGTGTAGCTGCGATTATCCAGGTTCTGTTGTGTGTGTTAGATTACATATAGCTGAAAATAGGATGAAATTGAAGCTTGAATTGGGCTCTGAATTTTACCATTGGGGATTTGATCGAATGGGTGAGGAAGTTTCACTTCAATGGACAACTGTAGAAGAAAAGAGATTTAAGGATATCATGAGATCAAATGTTCCCTCTAAAATTAAATATTTTTGGAACAATGGATTCAAATACTTTCCAAACAAGACAAGAAGACACTTGGTGAGCTATTACTTCAATGTGTTTATCATTCAACTAAGAACCTATCAGAACCGGGTGACCCCTGAGAATATTGACAGCGATGATGAAGTAGAGTTTGGCTGTTTGAGCAAAGGTTTTGGAATGGAAGCTATCGAGGGTCTTGGTGATGATGATTTTGTGGAGTGTTCTCTGAGCGAGCAGTACATTAATTTTGATTAG 1854 0.4013 MEEWSTFSNGPSLDSLGVETAGEFPGNGCCPGDGHVDNGAPHGKLTQKCLFYQLYPLYLKDNCSQAGARPLLVLVDGQQLDLYKLFSLVKERGGYAEVSKNGLWGSVTKGLGLNLEVYSPVKLVYDKYLNDFERWLKKIFEEKILKNGNNGCDWGLEWLPLDIEKEFKGLLCLNPKKKADDELFKSKSNKKKKNTDLVNHKNGNNLLDTKDQNNKSEDVQHIEGDDNEKSSNGIKDNPATLGAECADKECNLLKRKRDAFSGMLNWMKNIAKHPLDPLTRPIPKPSKWKEHKGRGFFGQFLKAREVLSLRNHEPNSGLSSLQKQKIQPAMFEDHVALDCRATGKSRCSERLPSSVKSRSCSCCNPCSHNGNTLAGSHNKVAEENCPHEKTTETKDVLTAKAMDESSGEESIKKQVSVGPRFQAEIPEWTGVASDSDSKWLGTRLWSLKHDTEPATETDLGRGRQEKCSCDYPGSVVCVRLHIAENRMKLKLELGSEFYHWGFDRMGEEVSLQWTTVEEKRFKDIMRSNVPSKIKYFWNNGFKYFPNKTRRHLVSYYFNVFIIQLRTYQNRVTPENIDSDDEVEFGCLSKGFGMEAIEGLGDDDFVECSLSEQYINFD 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03844 617 Gene3D - 40 147 IPR036431 GO:0003677
Vian1g03844 617 ProSiteProfiles ARID domain profile. 45 137 IPR001606 GO:0003677
Vian1g03844 617 SMART bright_3 46 138 IPR001606 GO:0003677
Vian1g03844 617 SMART ELM2_2 415 464 IPR000949 -
Vian1g03844 617 SMART ARID_2 42 133 - -
Vian1g03844 617 ProSiteProfiles ELM2 domain profile. 413 459 IPR000949 -
Vian1g03844 617 MobiDBLite consensus disorder prediction 184 198 - -
Vian1g03844 617 SUPERFAMILY ARID-like 47 138 IPR036431 GO:0003677
Vian1g03844 617 MobiDBLite consensus disorder prediction 211 232 - -
Vian1g03844 617 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 44 592 - -
Vian1g03844 617 MobiDBLite consensus disorder prediction 184 240 - -
Vian1g03844 617 Pfam ARID/BRIGHT DNA binding domain 59 133 IPR001606 GO:0003677
Vian1g03844 617 CDD ARID 51 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03844 Vian-Chr1 61488246 61493460 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vian1g03844 ARID 1e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03844 - - gmx:100819320 975.311