Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03837 ATGCGGTCGTGGTGGGGAAAGTCTTCTTCCAAAGAGGCGAAAAGGAAGGAAAACAAGGAAAGTATTATTCACACCATACAGCGGAAATTAAAGAATGCTTCCGAAGAGAAATGCAATAATAAATCTGCAAGATCAAGGAGATATCGTGATGATGCCATCTCCAAAAAGGGATCTAGATCTCTTGCACCTTCAAGATCACCATCACCCTCTACACATGTATCCCGATGTCAAAGTTTTGCAGAAAGGCCTCTCTCTCAACCACTTCCATTACCAGGGTCACATCTTTCGGATGCCATTGGTGCAAATGCTGGGGTTATTTTAACATCAAAACTTGATAGAGCCATAAACTCAAAGCCATCTCTATATTTTCCCCTTCCAATACCTGGTTTTGTTTCAAACAAGGAAGACGCTACTGATATGGAAGGAGAAATAGCCACTGCATCTGTTTCTAGTGAAAGCTCAGTTGATAGTGGCAACTCATTTGATTCGCCGCATTTTGTTAGCCCTCTGGCTTCTGATTGTGAAAATGGAAACCGAGCAACCATTAATAGTTCTTTCAGTCTGGTGCACAAGAACCAACCACTTATTACTATACAAAGAAACTCAAGAACATTCTCAAAACCAAGTCCTCAGTTGTGCAATAATAAGCCATTGTCTACCTCACCAAGAGGGGTTCCATTATATCTGCAAAATCTGCAAGTGGCTCGCCCAGGTGGTTTGTGTAGTGCTCCAGGTAGTTCAATATCAAGTCCTAGAAATCCAACGGGAGCTTTTGGTCCAGAACAAATGTTGAACTCTGAATTACAGACAAGAAAGCCTTATCCAGATATAGCTTCTGGGCACTCCTATAGTCTGGTTTCAGGCCGTAATTCTAGCCATATTTCAGTTGGTGGGGATCTTTCGGGACAGATGATTTTGCCTCAAAACAGGTGTAGCCCTGAGTGTTCTCCAATAGTTAGTCCCAGAATGACAAGCCCTGGTCCCAGTTCCAGGATACAGAGTGGTACTGTGACCCCTCTGCATCCCAAAGCTGGAGGAACTGCAGCAGAAGCACATACAAGACGCCTTGACGATGTGAAGCAAAAGAATCATCAGTTACCACTTCCTCCAATAACAGTTACTAAGCCGTGTCCATTTTCTCCAACCTATTCTGCATCAACAACTCCTTCAGCCCCTCGTAGTCCTGCCGGATCAGAAACTTCGATAAGCACAGTTCAACTTTTGATGTTCTATAGAGAAAGTGGTGAGATGTGTGCGATGAAGGAGGTAACCCTTTTTTCAGATGATGCTAAATCAAGGGAAAGTGCACAGCAACTTGGCCAAGAAATTGCAATGCTTAGTCGGTTGCGGCATCCAAATATTGTTCAGTATTATGGATCTGAGACGATCGATGACAGACTTTATGTATACTTGGAGTATGTCTCCGGTGGGTCAATCTATAAGCTGGTTAAGGAATATGGCCAGTTAGGTGAAATTGCAATTCGCAATTATACTCGACAAATTTTGTTAGGCCTCGCATATTTACACGCCAAGAACACTGTTCACAGTTCATTTTTTGCTTCAGAAAGTAATAGGGTTGCTGCTATGTTTAAGATTGGGAACAGCAAGGAACTTCCGACAATTCCAGATCATCTTTCAGAAGATGGAAAAGATTTTGTAAGGCTTTGTTTGCAAAGGAATCCTCAAAATCGTCCCTCGGCTGCTCAACTTCTAGAGCATTCATTTGTTAAAAATGCTATGCTGGAAAGATCTATTTTATCTGCCGCTCCTTCAGAAGATCCTACTGCTATAATAAATGCAGTGAGATCTCTGGTCGTTGGACCTGCAAAACGTAATTCATGCTTAGACTCAGAAGTAGCCGGGACCAATCCGCCTAGAAACTTGAAAGCGGGTTCTGGATCAAGTGATCCTCATACACCAAGAGAGATCTCTTGTCCCATCTCTCCCTCTTTTCCTTATAAATCATTGCATACAAGTGGAAGGATGTCGCCTCCAATATCTAGCCCTCGTACTGCATCAGGCTCATCTTCGCCCCTAACCAGTGGCGGCGGTGCTATTCCATATCATCAGACAAAACAATCAATAATCTCCCATGAAGTTTCGGGGATGATACAAAAGTCCCATCATGGTGTTATTCCAATATCTAGCCCTCGTACTGCATCTGGCTCATCTTCTCCCCTAACCAGTAGCGGCGGTGCTATTCCATATCATCAGACAAAGCAATCAATAATCTCTCATGAAGTTTCGGGTATGATCCAAAAGTCCCATCATGGTGTTATTCCAATATCTAGCCCTCGTACTGCGTCTGGCACATCTTCACCACTAACCAGTGGCGGTGGTGCAATTCCATTTCATCAGTCAAAGCAACAACTATTCTCACATGAAGTTGTGGGTATGAGCCAAAAGTCTCAGAATGGTGCCATTCCAATTTCTAGCCCTCGTACTGCATCTAGCTCTTCTTCACCACTAACCAGCGGTGGAGGCGCTGTTCCATTTCATCAGACAAAGCAACCACTATTCTCACACGAAGTTTTGAGTACGATCCAAAAGTCTCAGAATGGTGCTATTCCAATATCTGGCCCTCGTACTGCATCCGGCACATATTCGCCACTAACCAGCGGTGGAGGCGCTGTTCCATTTCATCAGACAAAGCAACCACTATTCTCACATGAAGTTTCCGGTGTGATTCAAAGGTCTCAGAATGGTTGTGTTCCAATATCTAGCCCTCCAACTCCATCTGGCTCATCTTCGCCACTAACCTGTGGGGGAGGAGCTATTCCGTTTCATCAGACAAAGCAGCCACTGTTCTCACATGAAGTTGTGGGTATGACTCAAAAGTCTCAGAATGGTGCCATTCCAATATCTAGCCCTCGTACTGCGTCTGGCTCATCTTCACCACTGACCAGTGGCGGCGGTGCTATTCCATTTCATCAGACAAAGCCACAACTATTCTCAAATGAACTTGTGGGTATGATCCAAAAGTCTCTGGATGGTGCTATTCCAACGGCTAGCCATCGTACTGCATCTGGCTCATCGCCTCTGACCAGTGGTGGCAGTGCTATTCCATATCTTCAGACAAGGCAATCACAAATATCACATGAAGTTGTTGGCATGAACCAAAATCCTCAGCATGGTTTTTATTCATTTGGAAATACCCCTCGTCAGGGTTCTCAGCATGCGCAGTTTGGGAGAAACTTGCAAACTACACATGCTTGCCGGGATGTAGGTTCATCTAACAATAATCATTCTAGGAGGGCTGTCCAGGGAGACCCAATAGAATTTCGCGATGGGAAATCATATTTGGCTGATTGCGTGTCACAACAGCTGTTGAGGGATTATGTACGGCTACATGCATGCCTGGATCGTAAACCCGATCCCCCAAATCCTGATCGCGCAAATGGCTTATGA 3408 0.4445 MRSWWGKSSSKEAKRKENKESIIHTIQRKLKNASEEKCNNKSARSRRYRDDAISKKGSRSLAPSRSPSPSTHVSRCQSFAERPLSQPLPLPGSHLSDAIGANAGVILTSKLDRAINSKPSLYFPLPIPGFVSNKEDATDMEGEIATASVSSESSVDSGNSFDSPHFVSPLASDCENGNRATINSSFSLVHKNQPLITIQRNSRTFSKPSPQLCNNKPLSTSPRGVPLYLQNLQVARPGGLCSAPGSSISSPRNPTGAFGPEQMLNSELQTRKPYPDIASGHSYSLVSGRNSSHISVGGDLSGQMILPQNRCSPECSPIVSPRMTSPGPSSRIQSGTVTPLHPKAGGTAAEAHTRRLDDVKQKNHQLPLPPITVTKPCPFSPTYSASTTPSAPRSPAGSETSISTVQLLMFYRESGEMCAMKEVTLFSDDAKSRESAQQLGQEIAMLSRLRHPNIVQYYGSETIDDRLYVYLEYVSGGSIYKLVKEYGQLGEIAIRNYTRQILLGLAYLHAKNTVHSSFFASESNRVAAMFKIGNSKELPTIPDHLSEDGKDFVRLCLQRNPQNRPSAAQLLEHSFVKNAMLERSILSAAPSEDPTAIINAVRSLVVGPAKRNSCLDSEVAGTNPPRNLKAGSGSSDPHTPREISCPISPSFPYKSLHTSGRMSPPISSPRTASGSSSPLTSGGGAIPYHQTKQSIISHEVSGMIQKSHHGVIPISSPRTASGSSSPLTSSGGAIPYHQTKQSIISHEVSGMIQKSHHGVIPISSPRTASGTSSPLTSGGGAIPFHQSKQQLFSHEVVGMSQKSQNGAIPISSPRTASSSSSPLTSGGGAVPFHQTKQPLFSHEVLSTIQKSQNGAIPISGPRTASGTYSPLTSGGGAVPFHQTKQPLFSHEVSGVIQRSQNGCVPISSPPTPSGSSSPLTCGGGAIPFHQTKQPLFSHEVVGMTQKSQNGAIPISSPRTASGSSSPLTSGGGAIPFHQTKPQLFSNELVGMIQKSLDGAIPTASHRTASGSSPLTSGGSAIPYLQTRQSQISHEVVGMNQNPQHGFYSFGNTPRQGSQHAQFGRNLQTTHACRDVGSSNNNHSRRAVQGDPIEFRDGKSYLADCVSQQLLRDYVRLHACLDRKPDPPNPDRANGL 1135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03837 1135 MobiDBLite consensus disorder prediction 949 972 - -
Vian1g03837 1135 MobiDBLite consensus disorder prediction 800 833 - -
Vian1g03837 1135 MobiDBLite consensus disorder prediction 377 399 - -
Vian1g03837 1135 MobiDBLite consensus disorder prediction 762 781 - -
Vian1g03837 1135 Coils Coil 16 36 - -
Vian1g03837 1135 MobiDBLite consensus disorder prediction 1 78 - -
Vian1g03837 1135 MobiDBLite consensus disorder prediction 627 641 - -
Vian1g03837 1135 ProSiteProfiles Protein kinase domain profile. 388 776 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g03837 1135 MobiDBLite consensus disorder prediction 712 734 - -
Vian1g03837 1135 Gene3D Transferase(Phosphotransferase) domain 1 518 585 - -
Vian1g03837 1135 MobiDBLite consensus disorder prediction 59 78 - -
Vian1g03837 1135 SUPERFAMILY Protein kinase-like (PK-like) 409 577 IPR011009 -
Vian1g03837 1135 Gene3D Transferase(Phosphotransferase) domain 1 401 517 - -
Vian1g03837 1135 MobiDBLite consensus disorder prediction 800 831 - -
Vian1g03837 1135 MobiDBLite consensus disorder prediction 320 399 - -
Vian1g03837 1135 SMART serkin_6 401 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g03837 1135 MobiDBLite consensus disorder prediction 320 337 - -
Vian1g03837 1135 Pfam Protein kinase domain 410 515 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g03837 1135 MobiDBLite consensus disorder prediction 616 687 - -
Vian1g03837 1135 MobiDBLite consensus disorder prediction 7 56 - -
Vian1g03837 1135 MobiDBLite consensus disorder prediction 348 362 - -
Vian1g03837 1135 MobiDBLite consensus disorder prediction 651 687 - -
Vian1g03837 1135 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 527 587 - -
Vian1g03837 1135 MobiDBLite consensus disorder prediction 949 978 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03837 Vian-Chr1 61383647 61390251 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03837 521 699 MAP Kinase Kinase Kinase AT1G63700 56.684 3.88e-49 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vian1g03837 Pkinase 2.2e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03837 K20717 - gmx:100814422 779.63