Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03830 ATGGTGCCAGAGAACATGAAGAAACAACTTGCTTTGTCTGTGAGAAGCATCCAATGGAGCTATGCAATTCTCTGGACTGATTCAACCACCCAACCAGGGGTATTGAGATGGGGGGAAGGGTATTACAATGGAGACATTAAGACAAGGAAAACAAGTCAAGGGGTGGAACTTAATTCTGACCAAATAGGGTTGCAGAGGAGTGAGCAGCTGCGAGAGCTATTCAAATCCCTCAAAACTACAGAAATCACCCCACAAAGCAAACGGCCTTCGGCAGCACTGTCCCCAGAAGATCTCACAGATGCTGAGTGGTATTACTTGGTTTGCATGTCCTTCGTATTCAACATTGGCCAAGGGTTACCAGGAAGAGTTCTGGCAAAGGGTCAATCCATTTGGCTCAACAATGCGCATTCCGCTGACTGTAAAGTTTTTAGTCGTTCTCTGCTCGCAAAGAGTGCATCCATCGAGACGGTCTTGTGTTTTCCGGTTATGGAAGGAGTTATCGAGCTAGGTACCACTGAACATGTCTCAGAAGATTTCAGTCTAATCGAGCGGATCAAGACTTCTTTCTTGAATAATTTTCATGTCAACGATCCTATTAAGTCAGGAACTGCATTGAAATCAAGGAACCAGGAAGATCTTGCTTATGTAGCATTTGATAATAATGTTGAATCAATTCCAGAAATTGGGTACGAAATAGCCAGCAAAACCTCTCCTGATGGTAGTTCAAATGCATTCCAAGCCTATCAACCACTGGATGAAACTTTCATGGTTGAAAGGATAACCAGTGGCACTTCTCAAGTCCAAAGCTGGCAAGTTATGGATGATGAGATAAGTAACTGTGTCCATAACTCCATGAATTCCAGCGACTGTATCTCACAAACTTTTGCCAGTCCTGAGAATATTCCTTCTTCACCCAAGTGTAACAACCCTTCTGACCCTTTTGCCCGAGATATTCAAAAGTGCAACAACCCAAAAATGACGCTAGTAGATCCTCGAGGTGATGATTGGCATTATCAGAGAGTTCTATCTGACCTTTTAAAAACCTCTGATCAGTTACTCATGAAAATGCATTCACAAAAGTTTCATCAGGAATCAAGCTTTGTTTGTTGGAGGCCAGAAAGGGCAACGGATTGCCAATGGCCAAGATCAGGAACTTCACAGAAGTTATTGAAGAAGGTATTGTTTGAAGTTCCTCAAATGCACATGGATGGTCTGCATGAATCTCAAGAAGAAAATGACTATAAGGAGGGAATGAGACTAGAGACTGATGAAATTGGCATGAACCACGTAATGTCAGAAAGAAGGAGAAGAGCAAAACTAAATGAAAGGTTTTTAACCCTTAGGTCAATGGTCCCTTCAATCAGTAAGGATGACAAAGTTTCAATACTTGATGATGCAATTGAATACCTTAAAAAGCTTGAGAGAAGGATAAAAGAGTTGGAAGTTCAAAGAGGGATAGCAAATATGGAGCCGGGGACTAGAAGATCGCCTCAAGATATGGTAGAAAGGACTTCTGATCATTATTTTAGCAAAAACAACAACGGAAAGAAATCAGTTGTAAAAAAGAGAAAGGTCTGTGGCGTGGATGAGACAGGAAAAGAGATTAATTCAGATGCTTTAAAAGGAAGTTATGCTAATGATATTACTGTGAGAACTAGTGACAATGAAATTGTGATCGAAATGAAGTGCCCCGCAAGAGCAGGAAGGCTACTAGAAATTATGGAAGCAGTTAATAGTCTCAGTATAGATTTTAATTCGGTTCAGTCAACAGAGGCTGATGGAAATCTTTATCTGACCATTAAATCTGTGCTCACAGGAGCAACTATTGCAACAACCAAAAGAATCAAACAAGCACTTCAAAAAGTGGCTTCGAAGTTCTGA 1881 0.4104 MVPENMKKQLALSVRSIQWSYAILWTDSTTQPGVLRWGEGYYNGDIKTRKTSQGVELNSDQIGLQRSEQLRELFKSLKTTEITPQSKRPSAALSPEDLTDAEWYYLVCMSFVFNIGQGLPGRVLAKGQSIWLNNAHSADCKVFSRSLLAKSASIETVLCFPVMEGVIELGTTEHVSEDFSLIERIKTSFLNNFHVNDPIKSGTALKSRNQEDLAYVAFDNNVESIPEIGYEIASKTSPDGSSNAFQAYQPLDETFMVERITSGTSQVQSWQVMDDEISNCVHNSMNSSDCISQTFASPENIPSSPKCNNPSDPFARDIQKCNNPKMTLVDPRGDDWHYQRVLSDLLKTSDQLLMKMHSQKFHQESSFVCWRPERATDCQWPRSGTSQKLLKKVLFEVPQMHMDGLHESQEENDYKEGMRLETDEIGMNHVMSERRRRAKLNERFLTLRSMVPSISKDDKVSILDDAIEYLKKLERRIKELEVQRGIANMEPGTRRSPQDMVERTSDHYFSKNNNGKKSVVKKRKVCGVDETGKEINSDALKGSYANDITVRTSDNEIVIEMKCPARAGRLLEIMEAVNSLSIDFNSVQSTEADGNLYLTIKSVLTGATIATTKRIKQALQKVASKF 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03830 626 Pfam Helix-loop-helix DNA-binding domain 428 474 IPR011598 GO:0046983
Vian1g03830 626 SMART finulus 430 479 IPR011598 GO:0046983
Vian1g03830 626 PANTHER TRANSCRIPTION FACTOR TT8 2 624 - -
Vian1g03830 626 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 426 491 IPR036638 GO:0046983
Vian1g03830 626 Coils Coil 463 490 - -
Vian1g03830 626 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 424 473 IPR011598 GO:0046983
Vian1g03830 626 Gene3D - 422 488 IPR036638 GO:0046983
Vian1g03830 626 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 7 189 IPR025610 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03830 Vian-Chr1 61336719 61339935 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03830 2 623 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G41315 45.732 1.50e-175 511
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian1g03830 bHLH-MYC_N 2.6e-50 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03830 - - gmx:100808167 1041.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03830 1 61336719 61339935 Vian1g03830 1 61336719 61339935 ECH