Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03827 ATGTCTGAAAGCAATAAATCACCCAAAAATGATCCTCAGTCCATAAAATATTGGCGGATTCAACACGGAGGAGCGTCCACGCAGACGGATCTTTCGGGTGTAGATTATTCGCCTTCTCTTTCCAAGAACGAGAGTAAGCAACAGTATGGAAGTTGTCAACCGAAGTCCCCTCAGATACTGAGCACAGCTCAGCTCATCTCTGCAATTGGTCAGGTATGCGATTCTGCAAGTCAATCGCTTTCGGTTTTACTCCCAAAGGAAAATTTGAATCAGGATGATAACGGATTCTCAAAAGAGAAACTTCTGGATAACATTGGAGAGAGAAAGAATAACCTGGTATATACTTCGAATGGCACTAAATTCTATCCTCTTACCGCGGGTGCTGCAAAGATTGTGCGGGAAAGATTGGATTTTCCTAAGGTAATGCAGAAGATATTAGTGTTTGAATCTCCTAATGAAAGTCAAGATTATATCCATTCTTTATTCCAGAGGTTTTTAAAGGCTAGTGATAAAATAACAAATAAAGACTGTAAAAGAATGAAACTTGCGAGGGAGGAAATGTCATTTAAATCTGGAAATGTATATCGGTGGGCATGTAGAAATGCTGTCAAGATGCTAAATTGTCAAATGAATGTTGCCCAGCTTGAGAACCTGGAAGCTAATTCCTCAGTTTCTGGCGGTGGCATTTCCTTACATACAAGCACCCCTGCATTGGCAAACGAGGAGAGGGATGTGTGCAATTCAATCACACACCAAAGTAAATCATTGACCAATGCTGCAATTCCGATCACAAGAATAGTTAGCCCTCTGTGTTCTGGCTATTTTCTGCAAGCTGTACCCCATGCTAATGCAGAAGTTGGTGATTGTCAGAAACTTTCTTGTAGTATCTATGCGGACTGTCACATTGACAGTTTAGCTTCATGTACTAGTGCTTCTGAGCAGTGCCAACATGGCATTGATGAAAATGAATCACTGGAAGTCCAAGAAAGGCATTTGTTGGATATAACTAATGATGAACCTAAGCTTCAGACTTTCTCTGCAACCCATCCGAAGCCTGGTAATTCCCAAGCCAAGCCAGAACATGCTTTTTCTGGGGCGTTAGCTGGTGTATGTGTCAGCCTTTGTCTGCATCCTGTTGACACAATTAAGACAGTTATTCAATCATGCCGTGCTGAACACCGGTCCATCTTTTACATTGGCAAATCAATTGTTTCTGATAGAGGTTTGCTTGGACTATATCGTGGAATTACCACAAATATTGCATCTTCAGCTCCAATTTCTGCAGTTTATACCTTTTCCTATGAATCAGTCAAAGCAGCTTTGCTTCCTTATCTTCCAAAGGAGTATCATTCTTTTGCCCATTGTGTAGGAGGTGGTTGTGCAAGCATTGCCACATCTTTCATTTTTACTCCTAGTGATCGAATAAAGCAGCAGATGCAAGTTCGTTCTCATTATCGCAACTGTTGGGATGCATTGGTTGGAGTTATCAGAAATGGGGGTTTTACCTCCCTATATTCAGGTTGGATAGCTGTACTATGCCGGAATGTTCCACATTCAATTATCAAGTTTTACACATATGAAAGTTTGAAGGAAGTGATGCCACCAAGTATTCAACCCAACACATTTCAAACTTTAGTATGTGGAGGATTAGCTGGATCTACTGCTGCTTTATTCACAACTCCTTTTGATGTGATCAAGACTAGATTACAGACACAGATTCCTGGATCTGCAAACCAATACGATAGTGTGCTCCACGCCCTCCAAAAAATTAGTAAGGGTGAAGGTGTGAAAGGCTTGTACAGGGGGTTGATTCCACGGTTGATTATGTACATGACGCAAGGATCACTGTTTTTTGCTTCATATGAATTTTTCAAGAGGGCATTTTCTCTGGAAGCATCACATCTCACTGATTTATGCGTCCAGGCCAATGACAGAGATGCTGAGAGAGAGAAAACTAGGAAGTAA 1965 0.4122 MSESNKSPKNDPQSIKYWRIQHGGASTQTDLSGVDYSPSLSKNESKQQYGSCQPKSPQILSTAQLISAIGQVCDSASQSLSVLLPKENLNQDDNGFSKEKLLDNIGERKNNLVYTSNGTKFYPLTAGAAKIVRERLDFPKVMQKILVFESPNESQDYIHSLFQRFLKASDKITNKDCKRMKLAREEMSFKSGNVYRWACRNAVKMLNCQMNVAQLENLEANSSVSGGGISLHTSTPALANEERDVCNSITHQSKSLTNAAIPITRIVSPLCSGYFLQAVPHANAEVGDCQKLSCSIYADCHIDSLASCTSASEQCQHGIDENESLEVQERHLLDITNDEPKLQTFSATHPKPGNSQAKPEHAFSGALAGVCVSLCLHPVDTIKTVIQSCRAEHRSIFYIGKSIVSDRGLLGLYRGITTNIASSAPISAVYTFSYESVKAALLPYLPKEYHSFAHCVGGGCASIATSFIFTPSDRIKQQMQVRSHYRNCWDALVGVIRNGGFTSLYSGWIAVLCRNVPHSIIKFYTYESLKEVMPPSIQPNTFQTLVCGGLAGSTAALFTTPFDVIKTRLQTQIPGSANQYDSVLHALQKISKGEGVKGLYRGLIPRLIMYMTQGSLFFASYEFFKRAFSLEASHLTDLCVQANDRDAEREKTRK 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03827 654 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 318 632 - -
Vian1g03827 654 MobiDBLite consensus disorder prediction 1 54 - -
Vian1g03827 654 FunFam S-adenosylmethionine carrier 1, chloroplastic/mitochondrial isoform A 328 449 - -
Vian1g03827 654 Pfam Mitochondrial carrier protein 540 629 IPR018108 -
Vian1g03827 654 Pfam Mitochondrial carrier protein 360 441 IPR018108 -
Vian1g03827 654 Pfam Mitochondrial carrier protein 449 533 IPR018108 -
Vian1g03827 654 FunFam Mitochondrial substrate carrier protein-like 482 641 - -
Vian1g03827 654 SUPERFAMILY Mitochondrial carrier 360 624 IPR023395 -
Vian1g03827 654 ProSiteProfiles Solute carrier (Solcar) repeat profile. 449 532 IPR018108 -
Vian1g03827 654 ProSiteProfiles Solute carrier (Solcar) repeat profile. 356 440 IPR018108 -
Vian1g03827 654 ProSiteProfiles Solute carrier (Solcar) repeat profile. 539 627 IPR018108 -
Vian1g03827 654 Gene3D Mitochondrial carrier domain 449 644 IPR023395 -
Vian1g03827 654 Gene3D Mitochondrial carrier domain 339 448 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03827 Vian-Chr1 61307861 61311444 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03827 364 628 Chloroplast and Mitochondria Gene Families AT1G07030 32.491 8.39e-32 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03827 - - pvu:PHAVU_002G289600g 1123.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03827 1 61307861 61311444 Vian1g03827 1 61307861 61311444 ECH