Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03821 ATGGGTTGTGACTTTTCTAAGTACACAGCATGCTGCATGGGTACAGAGGAGGATGGTCATCCGGCTCCTGAGGATCAGGTTGACGGTGAAAACGAAGACAATGCTGTTGAGGGCATTGAGTTGCCACGGTTTCATGAATTCACCATTGATCAGCTTAGGAGGGCTACATCAGGATTTGCTGTTGAAAATATAGTTTCTGAACATGGAGAAAAAGCTCCAAATGTGGTCTATAAAGGGAGACTTGATAATCAAATGCGAATTGCAGTCAAACGGTTCAACAGAAATGCTTGGCCTGAAGCGCAGCCATTTTTGGAGGAGGCCAGGGCTGTTGGTCAGCTGAGGAACCAACGACTGGTAAATCTGCTTGGTTGTTGCTGTGAAGGTGACGAGAGGTTACTCGTTGCAGAATATATGCCCAATGATACTTTGGCAAAACATTTATTCCATTGGGAAAATCAGCCCATGCGATGGGCAATGCGAATGAGAGTTGCATTGTTCCTTGCCCAAGCTCTGGAGTACTGTACCAGCAAAGGACGTGCACTATATCATGATCTAAATGCCTACAGAGTTCTTTATGATGATGACTACAATCCTAGACTTTCATGCTTTGGTTTGATGAAAAATAGTCGAGATGGAAAAAGTTATAGTACGAATTTGGCGTTTACTCCACCTGAATATCTCAGGACAGGCAGAGTCACTCCAGAGAGTGTAACTTATAGCTTTGGCACACTTTTGCTTGACCTTCTCAGTGGAAAACATATTCCTCCAAGCCATGCCCTTGACCTAATTAGAGACAAGAACCTTCAGATGCTATCAGACTCTTGCTTAGAAGGGGAGCTTACAAATGATGATGGGACTGAATTAGTGCGTCTGGCCTCACTATGTTTGCAATCTGAACCACGAGAGCGTCCTAATCCAAAGTCACTGGTTGCTGCTCTAATACCTCTACAGAAGGATTCTGAGGCTTCTTCTCATGTACTGATGGGTATACCAGATGGTGCAGCTACTTTTCCCCTTACACCTCTAGGAGAAGCTTGTCTACGAATGGATCTTACTGCTCTGCATGAGGTGATGGAGAAAATGGGGTATAAAGACGATGAGGGTGCAGCAACTGAGCTTTCATTCCAAATGTGGACGAACCAGATGCAGGAAACGTTGGACTCAAAGAAGAAAGGGGATGCTGCTTTTCGGCATAAGGATTTTAAAACGGCAATTGATGGCTATACGCAGTTCATTGATGTTGGAACAATGGTTTCTCCAACGGTTTATGCACGTCGTAGTTTATGTTATCTTATGAGCAACATGGCTGATGAAGCACTTAATGATGCAATGCAAGCCCAAGTAATATCACCCGTTTGGTATATTGCGTTTTATTTACAAGCTGTTGCACTTTTAGCAATGGGCAAGGAGAATGATGCCCAAATGGCACTTAAAGAAGGTTCCTCTCTTGAAAGTAAAAGGAGCACAAATTAA 1473 0.4365 MGCDFSKYTACCMGTEEDGHPAPEDQVDGENEDNAVEGIELPRFHEFTIDQLRRATSGFAVENIVSEHGEKAPNVVYKGRLDNQMRIAVKRFNRNAWPEAQPFLEEARAVGQLRNQRLVNLLGCCCEGDERLLVAEYMPNDTLAKHLFHWENQPMRWAMRMRVALFLAQALEYCTSKGRALYHDLNAYRVLYDDDYNPRLSCFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVTPESVTYSFGTLLLDLLSGKHIPPSHALDLIRDKNLQMLSDSCLEGELTNDDGTELVRLASLCLQSEPRERPNPKSLVAALIPLQKDSEASSHVLMGIPDGAATFPLTPLGEACLRMDLTALHEVMEKMGYKDDEGAATELSFQMWTNQMQETLDSKKKGDAAFRHKDFKTAIDGYTQFIDVGTMVSPTVYARRSLCYLMSNMADEALNDAMQAQVISPVWYIAFYLQAVALLAMGKENDAQMALKEGSSLESKRSTN 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03821 490 Pfam Protein tyrosine and serine/threonine kinase 75 312 IPR001245 GO:0004672|GO:0006468
Vian1g03821 490 Gene3D Tetratricopeptide repeat domain 372 484 IPR011990 GO:0005515
Vian1g03821 490 FunFam probable serine/threonine-protein kinase At4g35230 34 137 - -
Vian1g03821 490 FunFam probable serine/threonine-protein kinase At4g35230 383 490 - -
Vian1g03821 490 Gene3D Phosphorylase Kinase; domain 1 34 137 - -
Vian1g03821 490 SUPERFAMILY TPR-like 387 486 IPR011990 GO:0005515
Vian1g03821 490 FunFam probable serine/threonine-protein kinase At5g41260 139 330 - -
Vian1g03821 490 Gene3D Transferase(Phosphotransferase) domain 1 139 331 - -
Vian1g03821 490 ProSiteProfiles Protein kinase domain profile. 62 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g03821 490 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 25 488 IPR045845 GO:0004672|GO:0009742
Vian1g03821 490 SUPERFAMILY Protein kinase-like (PK-like) 39 318 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03821 Vian-Chr1 61253045 61263389 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03821 20 338 Glycoside Hydrolase AT3G07070 32.286 9.85e-41 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Vian1g03821 PK_Tyr_Ser-Thr 2e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03821 K14500 - gmx:100819210 924.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03821 1 61253045 61263389 Vian1g03821 1 61253045 61263389 ECH