Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03820 ATGGATGGGAGAGAGGTTATGTCATTTTCTGGTGGCTCACCTTCATATTACATGCATAGAGGAGGGGTTGGAGGGTCTGGTTCTGGAAATCTTAGTGGGGGAGGGGAGTTCCAAGCTACCCCTGGGTTCAGACCTTTGTCAAACCCTGCCATTCAAGCTGAGCCAAATTCAAGGGGTCAGGGAGGTGGTTCTGTAGGGTCTAGCTCCATATTTTCTGTGGAGCCTCCTCACGGTCGTGCCAATTTTAACCATGACATCGGCATTGGCAGTGGGGCACCTTCAAGTGAGCCTGTTAAGAAGAAAAGAGGGAGACCCCGTAAATATGGTCCTGATGGAACAGTTTCTTTGAGATTGTCTCCAATGTCTGCCCCCGCTAACTCCACCCAGGGTGGAAGTGCAACCACCCTTTCTCAGAAAAAGGGAAGAGGGCGCCCACCTGGATCTGGAAGGAAGCAACAATTAGCTGCATTAGGTGAATGGATGAATAGTTCAGCAGGCTTGGCCTTTTCACCTCATGTTGTCACTATAGGAGTTGGGGAGGACATTGTGGCTAAGTTATTATTGTTATCTCAACAGAGACCAAGGGCTCTTTGTGTTTTGTCAGGCACTGGGACAGTTTCTTCAGTCACTCTACGACAGCCTGCTTCTACCAATGCCAGTGTAACTTTTGAGGGACGATTCCAAATACTATGCTTGTCTGGTTCTTACTTGGTTGCTGAAGATGGTGGACCCTCCAATAGAACTGGTGGCATTAGTGTTTCACTTTCTAGTCCTGATGGTCATGTTATTGGTGGTGGTGTTGCTGTGCTTATTGCTGGAAGCCCTGTGCAGGTGGTATTGTGCAGTTTTGTGTATGGTGGCTCAAAGACCAAGCCTAAACAAGGGCTCACTATCACAAATGAAAGTGGTGAGCACCCTCAGCATAATGACAAGATGGCTACACCAGCCAGTGCTCCACCTGGTCATAATCAAAACTACCTCCCTTCTGGTTCACACATTTGGCCTGGACCTCAACCGGCAGAGCTGAAAAACACGCAAACCCACACTGGCATTGACTTGACTCGTGGCTGA 1071 0.4874 MDGREVMSFSGGSPSYYMHRGGVGGSGSGNLSGGGEFQATPGFRPLSNPAIQAEPNSRGQGGGSVGSSSIFSVEPPHGRANFNHDIGIGSGAPSSEPVKKKRGRPRKYGPDGTVSLRLSPMSAPANSTQGGSATTLSQKKGRGRPPGSGRKQQLAALGEWMNSSAGLAFSPHVVTIGVGEDIVAKLLLLSQQRPRALCVLSGTGTVSSVTLRQPASTNASVTFEGRFQILCLSGSYLVAEDGGPSNRTGGISVSLSSPDGHVIGGGVAVLIAGSPVQVVLCSFVYGGSKTKPKQGLTITNESGEHPQHNDKMATPASAPPGHNQNYLPSGSHIWPGPQPAELKNTQTHTGIDLTRG 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03820 356 Gene3D - 171 305 - -
Vian1g03820 356 MobiDBLite consensus disorder prediction 119 141 - -
Vian1g03820 356 MobiDBLite consensus disorder prediction 291 356 - -
Vian1g03820 356 SUPERFAMILY AF0104/ALDC/Ptd012-like 168 289 - -
Vian1g03820 356 CDD DUF296 171 283 IPR005175 -
Vian1g03820 356 MobiDBLite consensus disorder prediction 50 71 - -
Vian1g03820 356 Pfam Plants and Prokaryotes Conserved (PCC) domain 171 284 IPR005175 -
Vian1g03820 356 MobiDBLite consensus disorder prediction 1 153 - -
Vian1g03820 356 ProSiteProfiles PPC domain profile profile. 163 305 IPR005175 -
Vian1g03820 356 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 62 315 IPR039605 GO:0003680
Vian1g03820 356 MobiDBLite consensus disorder prediction 340 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03820 Vian-Chr1 61244572 61248219 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03820 1 356 AT-hook Motif Nuclear Localized (AHL) Family AT1G63470 48.837 3.04e-96 289
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03820 1 61244572 61248219 Vian1g03820 1 61244572 61248219 ECH
Vian10g00276 10 2542968 2546337 Vian1g03820 1 61244572 61248219 PCT