Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03811 ATGAAGTTGTGTACTTTATTGTTGTTGATTGGTTTGGTTTCCGTGCTCTCTTTTGTGGCTTCTGTCGGGTTGCCTTCAAATAATGAAGTTTCGGCACTTAGAAGATTCAAAGAAGCTGTTTATGAAGATCCACATAAGGCTTTGTCCAACTGGAATACTCTGGAGTCAGATCCTTGTGACTGGAATGGTGTTTCTTGCACTGCAACGCGAGATCATGTCATCAAGCTTAATATATCAGGGGCTTCGTTGAAGGGCTTTCTTGCTCCAGAATTTGGGAAAATCACATACATACAAGAACTGATCTTACATGGCAACAATCTCATTGGAATAATACCTAAAGAATTGGGCATGCTGAAATCTCTTAAGGTGTTGGATTTGGGAATGAATCAGTTGTCTGGACCAATTCCTCCGGAGATTGGAAATTCGACCCAACTTATGAAAATAAACCTGCAGTCCAACGGTTTGACTGGTAGGCTACCTCCGGAGCTAGGAAATTTGAAATACCTTCAAGAACTTCGACTGGACAGGAATAAGCTTCAAGGATCTCTTCCTGGTGGTAGCAGTTCAAATTTTTCTTCAAATATGCATGGGAAGTATGCCTCAGGTGTGAATTTAACTGCCTTCTGTCGTTCATCTCAGTTAAAAGTAGCAGATTTTTCATATAACTTTTTCGTTGGCAGCATACCCAAATGCTTGAAGTATCTTCCGAGATCAAGCTTTCAAGGAAATTGTTTCCATATCAAAGACATAAAACAGAGGACTTTGGTGCAATGCGGTGCTTCACCTGCCCAAAGTGGTCCAGTAGTGAACCCAAAGTCCGAATCTGCTACCAAACATGTAACCAAGCATCAAGAAACATCGAAACCTGCTTGGCTTTTGGCTCTAGAAATAGTGACGGGAACTATGGTTGGTTCTCTCTTTGTTATTGGTATTCTCACTGCAATTCAAAGGTGTAACAACAAATCATCTATCATCATACCTTGGAAAAAATCTGGAAGCGGAAAAGATTATCTGGCAATACATATAGACTCGGAGATGTTGAAGGATGTGACGAGGTATAGCAGACAGGATCTTGAAGTGGCCTGTGAAGACTTCAGCAACGTAATTGGGTCCTCACCAGATAGCGTGGTGTACAAGGGTACGATGAAAGGTGGACCCGAGATTGCTGTAATCTCCCTCTGCATCAAGGAAGAAAATTGGACGGGATACCTTGAGCTCTATTTTCAAAGAGAGGTGGCAGACTTGGCAAGGTTAGATCATGATAACGCAGGAAAACTGCTAGGATATTGCAGAGAGAGCATTCCATTTACAAGGATGCTGGTTTTTGAATATGCATCAAACGGAACACTTTATGATCACCTACATTGTTATGGAGAAGGGTGCCAGTTGTCATGGACACGGCGTATGAAAATTATCATTGGCATTGCACGTGGACTCAAGTATTTGCACAATGAAATTGAGCCAGCATTCACCATCTCAGAGTTGAATTCCAATGCTGTTTACCTTACAGAAGATTTTTCCCCTAAGCTGGTGGATTTTGAGAGTTGGAAGACAGTTCTTGAAAGATCAGAAAAAAATTCTGGTTCAGTTAGCAGCCAAGGAGCTGTTTGTGTTCTACCAAACTCCCTTGAAGCACGCCATGTTGACCCCAAAGGAAACATATATGCTTTTGGTGTACTTCTACTGGAGATAATCAGTGGAAGACCTCCATACTGCAAGGACAAAGGGTACTTGGTGGATTGGGCCAGGGACTATCTTGAAATGCCAGAAGTAATGTCATATGTGGTGGCTCCTGAGTTGAAGCATTTTAGATATGAAGACCTGAAAGCAATATGTGAGGTGATAACTCTTTGCATCAGTCCTGATCCCTCTGTACGTCCATCAATGCGTGAATTATGCATTATGTTGGAGAGCAGAATAGACACATCGATAAATGTGGAGCTAAAGGCATCATCTCTGGCTTGGGCTGAGCTAGCCCTTTCATCATAA 1989 0.4208 MKLCTLLLLIGLVSVLSFVASVGLPSNNEVSALRRFKEAVYEDPHKALSNWNTLESDPCDWNGVSCTATRDHVIKLNISGASLKGFLAPEFGKITYIQELILHGNNLIGIIPKELGMLKSLKVLDLGMNQLSGPIPPEIGNSTQLMKINLQSNGLTGRLPPELGNLKYLQELRLDRNKLQGSLPGGSSSNFSSNMHGKYASGVNLTAFCRSSQLKVADFSYNFFVGSIPKCLKYLPRSSFQGNCFHIKDIKQRTLVQCGASPAQSGPVVNPKSESATKHVTKHQETSKPAWLLALEIVTGTMVGSLFVIGILTAIQRCNNKSSIIIPWKKSGSGKDYLAIHIDSEMLKDVTRYSRQDLEVACEDFSNVIGSSPDSVVYKGTMKGGPEIAVISLCIKEENWTGYLELYFQREVADLARLDHDNAGKLLGYCRESIPFTRMLVFEYASNGTLYDHLHCYGEGCQLSWTRRMKIIIGIARGLKYLHNEIEPAFTISELNSNAVYLTEDFSPKLVDFESWKTVLERSEKNSGSVSSQGAVCVLPNSLEARHVDPKGNIYAFGVLLLEIISGRPPYCKDKGYLVDWARDYLEMPEVMSYVVAPELKHFRYEDLKAICEVITLCISPDPSVRPSMRELCIMLESRIDTSINVELKASSLAWAELALSS 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03811 662 ProSiteProfiles Protein kinase domain profile. 363 644 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g03811 662 FunFam Inactive receptor-like serine/threonine-protein kinase 337 444 - -
Vian1g03811 662 Gene3D Ribonuclease Inhibitor 28 141 IPR032675 -
Vian1g03811 662 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
Vian1g03811 662 Gene3D Phosphorylase Kinase; domain 1 339 444 - -
Vian1g03811 662 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 26 189 - -
Vian1g03811 662 Gene3D Transferase(Phosphotransferase) domain 1 445 652 - -
Vian1g03811 662 Pfam Protein tyrosine and serine/threonine kinase 366 633 IPR001245 GO:0004672|GO:0006468
Vian1g03811 662 PANTHER PROTEIN MALE DISCOVERER 2 21 660 - -
Vian1g03811 662 SUPERFAMILY L domain-like 26 236 - -
Vian1g03811 662 Gene3D Ribonuclease Inhibitor 142 262 IPR032675 -
Vian1g03811 662 SUPERFAMILY Protein kinase-like (PK-like) 343 637 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03811 Vian-Chr1 61190254 61193629 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03811 3 637 Receptor kinase-like Gene Family AT2G01210 26.207 7.09e-55 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Vian1g03811 PK_Tyr_Ser-Thr 2.6e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03811 - - gmx:100781978 1142.1