Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vian1g03807 | ATGGCTTTCAGCGGTACCCAACAGAAGTGCAAGGCTTGCGATAAAATTGTTCACTTCGTCGAAAGCTTATCTGCCGATGGGATCTCCTATCACAAAAACTGCTTTAGATGCAGCCATTGCAATGGCCTTCTCGCGATAAGCAACTACTGCTCTGGCGATGGAATTTTATACTGCAAGGTGCATTATGAGCAGCTTTTCAAGGAAACTGGCTCCTACCCCAAGAAAAATAGGACACCAAGCAAAATTTCTGCCTTCTTCTCTGGGACTCAAGAAAAATGCTCAAAATGCAAGAAAACAGTCTATCCGTTGGAAAAGTTGACAGTGGAAGGTGAGTTTTACCACAAATCATGCTTCAGGTGCGCCCACGGAGGGTGTTTCCTGACTCCTTCAACCTATGCCGCTCTTGATGGCTACCTATACTGCAAGCCACACTTCTCTCAGTTGTTCAAGGAGAAGGGCAGCTACAGTTATCTGTCCAAGCAAGCTTCATTGAAGAGAACTGAAATGCTACAAGAGCAAGAGGCTGCGTCTGCGGAGAATAAGAAGACTGATGGTAATCGCTCAGAGTCGGAAGCAGAAACAGAGACAAAACCAGAGACAGAAACAGCAGAGGTAGAAGCAGAGACAGAGGCAGAGACAGAGAAAAACGAAGCTGATGAGGAACCAAACTCTGACAAAGAGTAG | 684 | 0.4591 | MAFSGTQQKCKACDKIVHFVESLSADGISYHKNCFRCSHCNGLLAISNYCSGDGILYCKVHYEQLFKETGSYPKKNRTPSKISAFFSGTQEKCSKCKKTVYPLEKLTVEGEFYHKSCFRCAHGGCFLTPSTYAALDGYLYCKPHFSQLFKEKGSYSYLSKQASLKRTEMLQEQEAASAENKKTDGNRSESEAETETKPETETAEVEAETEAETEKNEADEEPNSDKE | 227 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vian1g03807 | 227 | MobiDBLite | consensus disorder prediction | 175 | 204 | - | - | |
| Vian1g03807 | 227 | FunFam | LIM domain and actin-binding 1 | 87 | 157 | - | - | |
| Vian1g03807 | 227 | FunFam | LIM domain and actin-binding 1 | 4 | 74 | - | - | |
| Vian1g03807 | 227 | Gene3D | Cysteine Rich Protein | 87 | 157 | - | - | |
| Vian1g03807 | 227 | Gene3D | Cysteine Rich Protein | 4 | 74 | - | - | |
| Vian1g03807 | 227 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 85 | 118 | - | - | |
| Vian1g03807 | 227 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 3 | 35 | - | - | |
| Vian1g03807 | 227 | ProSiteProfiles | LIM domain profile. | 91 | 151 | IPR001781 | - | |
| Vian1g03807 | 227 | SMART | lim_4 | 92 | 144 | IPR001781 | - | |
| Vian1g03807 | 227 | SMART | lim_4 | 9 | 61 | IPR001781 | - | |
| Vian1g03807 | 227 | ProSiteProfiles | LIM domain profile. | 8 | 68 | IPR001781 | - | |
| Vian1g03807 | 227 | Pfam | LIM domain | 10 | 65 | IPR001781 | - | |
| Vian1g03807 | 227 | Pfam | LIM domain | 93 | 148 | IPR001781 | - | |
| Vian1g03807 | 227 | ProSitePatterns | LIM zinc-binding domain signature. | 10 | 44 | IPR001781 | - | |
| Vian1g03807 | 227 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 36 | 74 | - | - | |
| Vian1g03807 | 227 | MobiDBLite | consensus disorder prediction | 168 | 227 | - | - | |
| Vian1g03807 | 227 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 119 | 157 | - | - | |
| Vian1g03807 | 227 | PANTHER | OS06G0237300 PROTEIN | 5 | 76 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vian1g03807 | Vian-Chr1 | 61103469 | 61104659 | Dispersed/Wgd |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | LIM | Vian1g03807 | LIM | 2.6e-11 | CL0167 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vian1g03807 | - | K24413 | vun:114179495 | 380.563 |