Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03804 ATGTGGGCTTGGATGCTTGGTGAAGGGCGTAGGGCGGTGTCCGAGGTGGCGTGCACCTACAACTGGGTGGCGCTCCGACACATGGGTGGCGGTCCGAGAACCTTTCCAGGCGGCGTGAACAAGTGGAAGTGGAAGCGCATGCACGCGAAACGCGCAGGAGACAAACAAAAGAGACTCATCGAGCAAGAGAAGCAGCTCTACGAGGCTCGCATTCGCTCCCACATCCGTTCCACCCTCTCCCCCGACCACCACTCTGCCGCCGCCGCCACCCATCGCCCTTTATCCCCTAACGACCACGTCAAAGCCCTCGCGGACCGCTTCGTCAAAGAAGGGGCCCAAGATCTCTGGAACACTAACGACGGTCCCCTGACTCCGAACCCGACACCGAACCCAACACCGAACCCAATATCGAACCCAAACCTTAATTTTCGCCCCAAACATTCTAGGGCCTACCGTTCAGTTCCCGAGGTTAGGAACAACCGTGTCGGGGCCCACAAGTATAGGTTTTGGCGGAAAGGTAGTGACGATTCTTCTTCCGGTGAGAGCGAGAGTGAGAATGAGAATGAATTGAGTTTGAAGACGGGTAGTAGTGCTTCTTTGGGGGAGTATGATGTGAAGAGAGAGAAGAGAGTGGTGCCTAAGAAATCTGAAGAAGTTGAGTTTATTAGACATGAACTTATTAAGCGGAAGTTGAGACAGATTGAGGAGCAAGAGATTGAGAAACAACACAGCTATGAAAGTATTCTAAGCAACACAAGATTTGATGAGTGCGGTATATCACCGCAAACTGTCAAGGCACTTTCTTCAGCTGGTTATGTTCATATGACACGGGTACAAGAGGCTAGCCTCTCGATTTGCCTTGAGGGCCTGGATGCTTTAGTCAAATCTAAAACTGGCACAGGAAAAAGTGTAGCTTTTTTGCTTCCTGCTATTGAAACAGTTCTGAAAGCTATGAGTAGCAGTACATCTCAACGGGTCCCCCCAATATATGTTCTTATTCTCTGCCCTACAAGAGAACTTGCTAGTCAAATTGCCGCTGTAGCGAAAGTTTTGCTGAAATATCAAGATGGCATTGGGGTGCAGACTCTTGTTGGAGGCATACGATTTAAAGTTGACCAAAAACGCCTCGAATCAGATCCATGCCAGATACTTGTTGCTACACCTGGTAGGTTGCTGGATCATATTGAGAATAAGTCTGGAATATCTCTGCGATTAATGGGCTTGCGGATGCTTGTACTTGATGAAGCTGATCATTTACTCGACCTGGGATTTAGAAAGGATGTAGAAAAAATTGTGGATTGTCTGCCCCGTCAAAGGCAATCTTTACTGTTTTCTGCAACCATACCAAAGGAGGTACGTCGCATATCCCAGCTTGTTTTGAAAAGGGAACACAAGTATGTTGATACAGTTGGAATGGGTTGCGTGGAAACTCCTGTTAAGGTGAAGCAATCTTATCTCGTTGCTCCTCATGAGTCACATTTTCAATTAGTGCATCATATTCTGAAGGAGCATATCTTGCAAACACCTGATTATAAGGTTATTGTATTCTGTATAACTGGAATGGTGACCTCACTCATGTATAACCTTCTTCGGGAAATGAAAATGAATGTGAGGGAGATGCATTCTCGAAAACCTCAGCTCTATCGTACTCGTATATCAGATGAGTTCAAGGAATCCAAACAATTGATTCTTGTCTCATCTGATGTTTCATCACGGGGAATGAATTATCCTGATGTCACCTTAGTCATACAGGTGGGAATTCCTTCTGACCGTGAACAATACATACACCGCCTTGGAAGAACAGGTCGAGAAGACAAAGAAGGGGAAGGCATATTGTTGATTGCTCCATGGGAAAAGTACTTTTTAGAAGAAATTAAGGATCTACCTTTACAGGAATTTCCCTTACCTGACATACATCCACAGGCAAAACTTAAGATTGAGAATTCGATGGCAAAGATTGATAATGACATCAAAGAAGCTGCTTATCATGCTTGGCTTGGTTATTACAACTCTATCAGGGAAATTGGGAGGGAAAAGAGCACTGTAGCTGAGCTGGCAAACCGATTTTCTGAATCAATTGGTTTACAGAGGCCTCCTGCTCTCTTCCGAAAAACTGCTATAAAAATGGGTTTGAAAGACATTCCTGGTATTAGAATTCGTAAATAG 2166 0.4548 MWAWMLGEGRRAVSEVACTYNWVALRHMGGGPRTFPGGVNKWKWKRMHAKRAGDKQKRLIEQEKQLYEARIRSHIRSTLSPDHHSAAAATHRPLSPNDHVKALADRFVKEGAQDLWNTNDGPLTPNPTPNPTPNPISNPNLNFRPKHSRAYRSVPEVRNNRVGAHKYRFWRKGSDDSSSGESESENENELSLKTGSSASLGEYDVKREKRVVPKKSEEVEFIRHELIKRKLRQIEEQEIEKQHSYESILSNTRFDECGISPQTVKALSSAGYVHMTRVQEASLSICLEGLDALVKSKTGTGKSVAFLLPAIETVLKAMSSSTSQRVPPIYVLILCPTRELASQIAAVAKVLLKYQDGIGVQTLVGGIRFKVDQKRLESDPCQILVATPGRLLDHIENKSGISLRLMGLRMLVLDEADHLLDLGFRKDVEKIVDCLPRQRQSLLFSATIPKEVRRISQLVLKREHKYVDTVGMGCVETPVKVKQSYLVAPHESHFQLVHHILKEHILQTPDYKVIVFCITGMVTSLMYNLLREMKMNVREMHSRKPQLYRTRISDEFKESKQLILVSSDVSSRGMNYPDVTLVIQVGIPSDREQYIHRLGRTGREDKEGEGILLIAPWEKYFLEEIKDLPLQEFPLPDIHPQAKLKIENSMAKIDNDIKEAAYHAWLGYYNSIREIGREKSTVAELANRFSESIGLQRPPALFRKTAIKMGLKDIPGIRIRK 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03804 721 Pfam DEAD/DEAH box helicase 276 454 IPR011545 GO:0003676|GO:0005524
Vian1g03804 721 Gene3D - 476 701 IPR027417 -
Vian1g03804 721 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 500 650 IPR001650 -
Vian1g03804 721 Gene3D - 229 468 IPR027417 -
Vian1g03804 721 MobiDBLite consensus disorder prediction 171 195 - -
Vian1g03804 721 CDD SF2_C_DEAD 481 614 - -
Vian1g03804 721 SMART helicmild6 524 605 IPR001650 -
Vian1g03804 721 MobiDBLite consensus disorder prediction 115 158 - -
Vian1g03804 721 MobiDBLite consensus disorder prediction 124 138 - -
Vian1g03804 721 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 283 466 IPR014001 -
Vian1g03804 721 Pfam Helicase conserved C-terminal domain 499 603 IPR001650 -
Vian1g03804 721 SMART ultradead3 271 482 IPR014001 -
Vian1g03804 721 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 252 280 IPR014014 GO:0003724
Vian1g03804 721 PANTHER RNA HELICASE 210 650 - -
Vian1g03804 721 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 328 624 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03804 Vian-Chr1 61085918 61089802 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03804 252 630 Eukaryotic Initiation Factors Gene Family AT3G19760 26.768 4.01e-40 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03804 - - vun:114177584 1302.73