Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03800 ATGCCTCAGGGAACCCTTGAAGTTTTTCTTGAATATGCCAAAGGCCTTGAGAACACAGATTTTCTCTATAAAGGAAGTAATCCAAAGTGGAATGAAAATTTCATATTCAACGTTTCTGAAGGCGTTAACGAACTGAGATTAAAGATCATGGACAGTGATTCCATGTCTGCAGATGATATCGTGGGAGAAGTTACCATTACGTTGGATGACTTGTTCAAGGCAGGGAGCATTCCACCAACTTCATACAATGTTGTGAAGGATGACCGTTATTGTGGGGAGATTAGAGTTGGCCTCATTTTTAAGCGTCAGGAACGCAGAGAACGCGGCATGGAGGAAGATTTTGGGGGATGGAAGGAGTCTCGTTGCATAGACTAA 375 0.4267 MPQGTLEVFLEYAKGLENTDFLYKGSNPKWNENFIFNVSEGVNELRLKIMDSDSMSADDIVGEVTITLDDLFKAGSIPPTSYNVVKDDRYCGEIRVGLIFKRQERRERGMEEDFGGWKESRCID 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03800 124 PANTHER C2 DOMAIN-CONTAINING 24 105 - -
Vian1g03800 124 ProSiteProfiles C2 domain profile. 1 81 IPR000008 -
Vian1g03800 124 SMART C2_3c 5 80 IPR000008 -
Vian1g03800 124 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 101 IPR035892 -
Vian1g03800 124 Gene3D C2 domain 8 102 IPR035892 -
Vian1g03800 124 Pfam C2 domain 18 74 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03800 Vian-Chr1 61051343 61052751 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03800 8 104 C2H2 Transcription Factor Family AT4G05330 28.866 7.45e-08 47.8