Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03771 ATGGAAAAGCTGAATTTTGTTAAAAATGGAGTGAGCAAATTGCCTCCTGGTTTTCGTTTTCAGCCAACAGATGAAGAGCTTGTTTTCCAATACCTCAAGTGTAAGGTCTTCTCCTATCCCTTGCCTGCTTCTATCATTCCTGAGATCAATGTCTGCAAGCATGATCCTTGGGATTTACCTGGGAATTGTGATCCTCAAGAGAGGTATTTTTTCAGTCCGAAGGAAGCAAAGTATAGAAATGGTAATCGCATGAACAGAACAACAAAGTGTGGATATTGGAAGGCAACAGGGTCAGACAAGAGAATTTCATCATCTTCAAATGCATGCAATGGCATTGTGGGAATAAGAAAAACATTGATTTTTTATGAAGGAAAATCTCCAAAAGGATCCAGAACTGACTGGGTCTTGCATGAATATCGTCTTGCTAACGCAGAAACTGCCGCTTGCAACTCATCCCATAACTACGTAAACGAGATTGGAGATTGGGTTTTGTGTCGCTTATCGATGAAGAAAAGAAGTATAGAAAGTGGTGTTGATGAGAAGCAAAGAGTTCATGGTGGTCCAAGATTAATGTTTGATTTTATGATGTTGGGAAAAACAGATTCTTCTACATCGTCATCGTGTTCAAGTTCTAATAACATTATGGAAGTTTCTTCAAATGTATCGGATCATGAAGAAACAAGTGGTGGCTATACCTACTTTTAG 705 0.3887 MEKLNFVKNGVSKLPPGFRFQPTDEELVFQYLKCKVFSYPLPASIIPEINVCKHDPWDLPGNCDPQERYFFSPKEAKYRNGNRMNRTTKCGYWKATGSDKRISSSSNACNGIVGIRKTLIFYEGKSPKGSRTDWVLHEYRLANAETAACNSSHNYVNEIGDWVLCRLSMKKRSIESGVDEKQRVHGGPRLMFDFMMLGKTDSSTSSSCSSSNNIMEVSSNVSDHEETSGGYTYF 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03771 234 Gene3D NAC domain 23 175 IPR036093 GO:0003677|GO:0006355
Vian1g03771 234 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 201 - -
Vian1g03771 234 ProSiteProfiles NAC domain profile. 14 170 IPR003441 GO:0003677|GO:0006355
Vian1g03771 234 SUPERFAMILY NAC domain 10 170 IPR036093 GO:0003677|GO:0006355
Vian1g03771 234 Pfam No apical meristem (NAM) protein 15 141 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03771 Vian-Chr1 60634694 60635779 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03771 1 173 NAC Transcription Factor Family AT5G13180 61.272 3.58e-72 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vian1g03771 NAM 1.9e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03771 - - gmx:100812015 404.831