Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03766 ATGGCAGCTTTTTCATCCCAATCCTACCATCCCTTTCTACTTCACTCCACAAACACCCAACAACCCCTTATAAACACTCCTACCACCCATTCTTTTCACAACGAAAAAACGTCTCTTAATACTCTCACTAATCAAGAATCTACCAGCAGTGACATTGAGCCTTCTGTCATAAAAAACCACAGTCCTCAGACATCCATGGTTGAAGATAAACTTGAAATAGGTGAACAAGTTACTCAAAACCTCACCTCTATGCAGAAGAAGAGAACACAAAAAAATGGACCTTCCTTAACCAGCCCCTTATCAATGGATTCGGCAGAAGGGGCAAGCAAGAAACAGAAGAAAAGCAATGGTGGTGATCAAGGAGAAAACAAGCCAAAAGAAGTGAAGAAGGATCAAAAGAAGGGTCCAGAAGATCCTCCAACGGGGTATATCCACGTTAGAGCAAGAAGGGGTCAAGCAACGGATAGCCACAGCCTTGCCGAAAGGGTGAGAAGAGAGAAAATAAGTGAAAGGATGAAGACGTTGCAGCGACTTGTGCCAGGCTGTGATAAGGTAACCGGAAAGGCCCTTGTGTTGGACGAAATAATCAATTATGTTCAGTCCTTACAGAATCAAGTGGAGTTCTTGTCAATGAAACTTGCTTCTGTGAATCCCATGTTCTTTGACTTGGCAATGGACTTAGACACGCTCACGGTTAGGCCTGATCAGAAGTTAAATAATGCAGCATCCCCATCACTACTACCATGTGTGGAACAATGCAGACCAAACCAGGCCATTGCTTTTGCTGACACGACCACCCTGACCACCACTACCAGCAGCTTCCCCACCGCTAATAATGATGACTTTCTTTTGGATTATTCATCTTCATCTTTTCTTCAACCCCACAGGCCAAATGTCTTCTTCGAGTATAACGGTGGTCAGATTTGGGAAGTAGACCAGCGACAAAAGTTTCTTCAACCATATGGATTCGCCAATAATACTGGCTCTTTCAATTAA 996 0.4357 MAAFSSQSYHPFLLHSTNTQQPLINTPTTHSFHNEKTSLNTLTNQESTSSDIEPSVIKNHSPQTSMVEDKLEIGEQVTQNLTSMQKKRTQKNGPSLTSPLSMDSAEGASKKQKKSNGGDQGENKPKEVKKDQKKGPEDPPTGYIHVRARRGQATDSHSLAERVRREKISERMKTLQRLVPGCDKVTGKALVLDEIINYVQSLQNQVEFLSMKLASVNPMFFDLAMDLDTLTVRPDQKLNNAASPSLLPCVEQCRPNQAIAFADTTTLTTTTSSFPTANNDDFLLDYSSSSFLQPHRPNVFFEYNGGQIWEVDQRQKFLQPYGFANNTGSFN 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03766 331 SMART finulus 158 208 IPR011598 GO:0046983
Vian1g03766 331 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 150 219 IPR036638 GO:0046983
Vian1g03766 331 MobiDBLite consensus disorder prediction 39 68 - -
Vian1g03766 331 CDD bHLH_AtBPE_like 142 218 - -
Vian1g03766 331 MobiDBLite consensus disorder prediction 39 66 - -
Vian1g03766 331 Gene3D - 149 220 IPR036638 GO:0046983
Vian1g03766 331 MobiDBLite consensus disorder prediction 82 160 - -
Vian1g03766 331 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 43 249 IPR024097 GO:0006355
Vian1g03766 331 MobiDBLite consensus disorder prediction 107 160 - -
Vian1g03766 331 MobiDBLite consensus disorder prediction 82 105 - -
Vian1g03766 331 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 152 202 IPR011598 GO:0046983
Vian1g03766 331 Pfam Helix-loop-helix DNA-binding domain 156 203 IPR011598 GO:0046983
Vian1g03766 331 FunFam Basic helix-loop-helix transcription factor 149 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03766 Vian-Chr1 60588283 60590176 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03766 62 233 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 54.396 2.63e-54 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian1g03766 HLH 3.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03766 - - vun:114179333 525.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03766 1 60588283 60590176 Vian1g03766 1 60588283 60590176 ECH