Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03762 ATGAAGAACTTGCCAACATGGAAAACCATGGCAGTGACTGTGGTGTTGCTTCAATTGAGCTTTTCCTTGGAGATTTTCTGTCTCTCTAATCATGCAGATAGAATTGTTCGGCTTCCCGGGCAACCCAACACACGCTTCCAACAGTTCTCAGGATATGTTACAGTGGATGATCTCAAACACAAAGCTCTCTTTTACTATTTTGTTGAATCAGAAACTCATCCAGCTTCAAAGCCTCTTGTTCTCTGGCTCAATGGAGGACCTGGCTGTTCTTCTCTTGGAGTGGGTGCATTCTCTGAAAATGGACCTTTTAGACCAAATGGGGAAGTTCTGATTAAAAACGAGTACAGTTGGAACAGAGAGACAAACATTTTGTATTTGGAGACACCAGTTGGAGTGGGGTTCTCTTATGCTAAAGGTGGCTCTTCCTATGAGACTCTGAATGATGAGACAACAGCCAGGGACAATCTTGTATTCTTGCAACGCTGGTTCAACAAGTTCCCTCAATTCAGGCACAGAGATCTGTTTCTAGCAGGTGAAAGCTATGCAGGGCATTATGTTCCACAACTTGCAAAGCTCATGATTGAAATAAACGAAAAGGAGAAGTTATTCAATCTGAAAGGCATCGCCTTGGGTAACCCAGTTCTAGAATATGCCACTGACTTGAATTCAAGGGCCGAGTTCTTCTGGTCTCACGGTTTGATATCTGATTCAACGTACAAATTGTTCACTACAGGCTGTAACTATTCCCGGTACGTCAGTGAATACTACAGAGACTCGATTTCTCCGCTTTGTTCAAAAGTTTTGAGGCAAGTAGCCAGAGAAACCAGTAAGTTTGTGGACAAATATGATGTCACCCTTGATGTTTGCATTTCATCAGTGCTTTCACAGTCCAAAGCTATTTGTCCTCAAGGCCAAAACTTAATGCCTCTTGCCAAACAGAAAACAAATGAGAGCATAGATGTATGTGTAGATGACAAAGTTACTAATTACTTGAACCGAAAAGATGTACAAGAGGCGCTCCATGCCAAGCTTGTCGGAGTCCGAAAATGGGATGTCTGCAGCAACAACAGCATTTTGAACTATGATATGCTCAACCTGGAGAAACCTACACTCCCTGTTGTTGGATCACTCATAAAATCTGGAGTTCGGGTCTTAATTTACAGTGGAGATCAAGATTCAGTAATTCCACTGACTGGAAGCCGCACCTTAGTTCAAAAGCTGGCTAGACAACTAGGACTGAATACAACAGTCCCCTACAGAGTATGGTTTGAAGGCCAGCAGGTTGGTGGATGGACTCAAGTTTATGGCAGTATCCTCTCATTTGCTACTGTCAGAGGTGCCTCTCATGAAGCCCCTTTCTCTCAGCCTGAAAGATCATTTGTTTTGTTCAAGTCATTCTTGGAAGATAGGCCTCTGCCTGAAATTTTCTGA 1431 0.4298 MKNLPTWKTMAVTVVLLQLSFSLEIFCLSNHADRIVRLPGQPNTRFQQFSGYVTVDDLKHKALFYYFVESETHPASKPLVLWLNGGPGCSSLGVGAFSENGPFRPNGEVLIKNEYSWNRETNILYLETPVGVGFSYAKGGSSYETLNDETTARDNLVFLQRWFNKFPQFRHRDLFLAGESYAGHYVPQLAKLMIEINEKEKLFNLKGIALGNPVLEYATDLNSRAEFFWSHGLISDSTYKLFTTGCNYSRYVSEYYRDSISPLCSKVLRQVARETSKFVDKYDVTLDVCISSVLSQSKAICPQGQNLMPLAKQKTNESIDVCVDDKVTNYLNRKDVQEALHAKLVGVRKWDVCSNNSILNYDMLNLEKPTLPVVGSLIKSGVRVLIYSGDQDSVIPLTGSRTLVQKLARQLGLNTTVPYRVWFEGQQVGGWTQVYGSILSFATVRGASHEAPFSQPERSFVLFKSFLEDRPLPEIF 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03762 476 Gene3D alpha/beta hydrolase 29 291 IPR029058 -
Vian1g03762 476 FunFam Carboxypeptidase 28 473 - -
Vian1g03762 476 Gene3D - 370 468 - -
Vian1g03762 476 ProSitePatterns Serine carboxypeptidases, histidine active site. 439 456 IPR033124 GO:0004185
Vian1g03762 476 Gene3D - 322 356 - -
Vian1g03762 476 SUPERFAMILY alpha/beta-Hydrolases 37 473 IPR029058 -
Vian1g03762 476 Pfam Serine carboxypeptidase 40 468 IPR001563 GO:0004185|GO:0006508
Vian1g03762 476 ProSitePatterns Serine carboxypeptidases, serine active site. 176 183 IPR018202 GO:0004185
Vian1g03762 476 PRINTS Carboxypeptidase C serine protease (S10) family signature 126 136 IPR001563 GO:0004185|GO:0006508
Vian1g03762 476 PRINTS Carboxypeptidase C serine protease (S10) family signature 162 187 IPR001563 GO:0004185|GO:0006508
Vian1g03762 476 PRINTS Carboxypeptidase C serine protease (S10) family signature 439 452 IPR001563 GO:0004185|GO:0006508
Vian1g03762 476 PRINTS Carboxypeptidase C serine protease (S10) family signature 113 125 IPR001563 GO:0004185|GO:0006508
Vian1g03762 476 FunFam Carboxypeptidase 370 469 - -
Vian1g03762 476 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 36 456 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03762 Vian-Chr1 60546636 60549611 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03762 330 472 Calmodulin-binding Proteins AT2G22960 27.972 3.50e-16 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03762 K16297 - gmx:100800002 878.241
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03762 1 60546636 60549611 Vian1g03762 1 60546636 60549611 ECH