LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian1g03762	ATGAAGAACTTGCCAACATGGAAAACCATGGCAGTGACTGTGGTGTTGCTTCAATTGAGCTTTTCCTTGGAGATTTTCTGTCTCTCTAATCATGCAGATAGAATTGTTCGGCTTCCCGGGCAACCCAACACACGCTTCCAACAGTTCTCAGGATATGTTACAGTGGATGATCTCAAACACAAAGCTCTCTTTTACTATTTTGTTGAATCAGAAACTCATCCAGCTTCAAAGCCTCTTGTTCTCTGGCTCAATGGAGGACCTGGCTGTTCTTCTCTTGGAGTGGGTGCATTCTCTGAAAATGGACCTTTTAGACCAAATGGGGAAGTTCTGATTAAAAACGAGTACAGTTGGAACAGAGAGACAAACATTTTGTATTTGGAGACACCAGTTGGAGTGGGGTTCTCTTATGCTAAAGGTGGCTCTTCCTATGAGACTCTGAATGATGAGACAACAGCCAGGGACAATCTTGTATTCTTGCAACGCTGGTTCAACAAGTTCCCTCAATTCAGGCACAGAGATCTGTTTCTAGCAGGTGAAAGCTATGCAGGGCATTATGTTCCACAACTTGCAAAGCTCATGATTGAAATAAACGAAAAGGAGAAGTTATTCAATCTGAAAGGCATCGCCTTGGGTAACCCAGTTCTAGAATATGCCACTGACTTGAATTCAAGGGCCGAGTTCTTCTGGTCTCACGGTTTGATATCTGATTCAACGTACAAATTGTTCACTACAGGCTGTAACTATTCCCGGTACGTCAGTGAATACTACAGAGACTCGATTTCTCCGCTTTGTTCAAAAGTTTTGAGGCAAGTAGCCAGAGAAACCAGTAAGTTTGTGGACAAATATGATGTCACCCTTGATGTTTGCATTTCATCAGTGCTTTCACAGTCCAAAGCTATTTGTCCTCAAGGCCAAAACTTAATGCCTCTTGCCAAACAGAAAACAAATGAGAGCATAGATGTATGTGTAGATGACAAAGTTACTAATTACTTGAACCGAAAAGATGTACAAGAGGCGCTCCATGCCAAGCTTGTCGGAGTCCGAAAATGGGATGTCTGCAGCAACAACAGCATTTTGAACTATGATATGCTCAACCTGGAGAAACCTACACTCCCTGTTGTTGGATCACTCATAAAATCTGGAGTTCGGGTCTTAATTTACAGTGGAGATCAAGATTCAGTAATTCCACTGACTGGAAGCCGCACCTTAGTTCAAAAGCTGGCTAGACAACTAGGACTGAATACAACAGTCCCCTACAGAGTATGGTTTGAAGGCCAGCAGGTTGGTGGATGGACTCAAGTTTATGGCAGTATCCTCTCATTTGCTACTGTCAGAGGTGCCTCTCATGAAGCCCCTTTCTCTCAGCCTGAAAGATCATTTGTTTTGTTCAAGTCATTCTTGGAAGATAGGCCTCTGCCTGAAATTTTCTGA	1431	0.4298	MKNLPTWKTMAVTVVLLQLSFSLEIFCLSNHADRIVRLPGQPNTRFQQFSGYVTVDDLKHKALFYYFVESETHPASKPLVLWLNGGPGCSSLGVGAFSENGPFRPNGEVLIKNEYSWNRETNILYLETPVGVGFSYAKGGSSYETLNDETTARDNLVFLQRWFNKFPQFRHRDLFLAGESYAGHYVPQLAKLMIEINEKEKLFNLKGIALGNPVLEYATDLNSRAEFFWSHGLISDSTYKLFTTGCNYSRYVSEYYRDSISPLCSKVLRQVARETSKFVDKYDVTLDVCISSVLSQSKAICPQGQNLMPLAKQKTNESIDVCVDDKVTNYLNRKDVQEALHAKLVGVRKWDVCSNNSILNYDMLNLEKPTLPVVGSLIKSGVRVLIYSGDQDSVIPLTGSRTLVQKLARQLGLNTTVPYRVWFEGQQVGGWTQVYGSILSFATVRGASHEAPFSQPERSFVLFKSFLEDRPLPEIF	476

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian1g03762	476	Gene3D	alpha/beta hydrolase	29	291	IPR029058	-
	Vian1g03762	476	FunFam	Carboxypeptidase	28	473	-	-
	Vian1g03762	476	Gene3D	-	370	468	-	-
	Vian1g03762	476	ProSitePatterns	Serine carboxypeptidases, histidine active site.	439	456	IPR033124	GO:0004185
	Vian1g03762	476	Gene3D	-	322	356	-	-
	Vian1g03762	476	SUPERFAMILY	alpha/beta-Hydrolases	37	473	IPR029058	-
	Vian1g03762	476	Pfam	Serine carboxypeptidase	40	468	IPR001563	GO:0004185\|GO:0006508
	Vian1g03762	476	ProSitePatterns	Serine carboxypeptidases, serine active site.	176	183	IPR018202	GO:0004185
	Vian1g03762	476	PRINTS	Carboxypeptidase C serine protease (S10) family signature	126	136	IPR001563	GO:0004185\|GO:0006508
	Vian1g03762	476	PRINTS	Carboxypeptidase C serine protease (S10) family signature	162	187	IPR001563	GO:0004185\|GO:0006508
	Vian1g03762	476	PRINTS	Carboxypeptidase C serine protease (S10) family signature	439	452	IPR001563	GO:0004185\|GO:0006508
	Vian1g03762	476	PRINTS	Carboxypeptidase C serine protease (S10) family signature	113	125	IPR001563	GO:0004185\|GO:0006508
	Vian1g03762	476	FunFam	Carboxypeptidase	370	469	-	-
	Vian1g03762	476	PANTHER	SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE	36	456	IPR001563	GO:0004185\|GO:0006508

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian1g03762	Vian-Chr1	60546636	60549611	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian1g03762	330	472	Calmodulin-binding Proteins	AT2G22960	27.972	3.50e-16	75.1

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vian1g03762	1	60546636	60549611	Vian1g03762	1	60546636	60549611	ECH