Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03761 ATGCATGTCATCTGGGAATTGTTGGTTCAGCTAAAGACAAAATCATTTCTTGAAGAGAGTTTGTACAAATTCATTGGCCTCACTTCTGATTCTGATCCTATTTCTCTTATGTGCAAGAAACGAGCGCTGAAATGGTTTGCTTTTATAGCTCTTTATCGTACAAAGATGTCAAAAAAGTATAGCGGAAAAGGCCAAGAGAGGGAATTGGAACTCGAAAGTGACGAGTCTGAGGCTGAGATTGAGGCCCCATTGCCTCTAACTGTGACCTCTCGGGCTTTGTATATGTTGGGAGATATCACTGCAGGGCCTGCGTTTAAGTTCACGCAATGGCTCCAATTGGTTCGTAAGCGCACTGCAAAACATCGTCCTTCTGGCTTCCCTCATCGCACTTCCATCACCATGTCGTCTACTTCTTGCGAACGGTTGGAGGATCCAAAATTGGAGTTACACCCTGATCAGACAGAAATTAGATTGTGGGAGAGGCTTGGGAAGGCTGCAATGTTGGACATTGAGTCGAGCTCTTTTTCTTGGGACATGCTCTCTTCACTGCACCACACTGAACACGGTAGTAGCAATGAACAATCCGAAGATGAGATGAACAAAGCTCTCGAGGTAACTGTAAATTCTGGAGGAGTTGTCTTCTTTGCCTTTTTCAATCTGCCTGGGAATGCCGATATTTATCCAAAAGAAGCAGCAGCAGTTATAAAGATATCACCATCAAGAATGGCAACACAGTCTGAACGCCTTGGCTACGAATTTGCCAAGTGGTTGGGAGTCCAAACTCCACAGTGTAGAGTCATTCACAATACCAGTCATGAATGGCAACAAATAAAGGAAGCTGCGGAAAGAGCCAGAGAAGCAGCAAATTCTGAGGGTGATGAAATTGGCGAGGTGACATGTTTTGAACTTTTGGAAGCACTCGAGCTCAGCCGGTGTCTCTTTTTTATGAGTTATGTACACGGTTCACCCTTGCTTGAAAGCTCTACAGCATTCAAGTCAAAGGAATCTGCAGAAAGAACATCAGAAGCTCTTGGCAGGGTGCTGATGCTGGACCTTGTCATCAGAAATGAAGATAGGTTGCCTTGCCGTGAGCTTAGATGGCGTGGGAATCCAGCGAATTTGTTGTTGGCTGGAAAGACTATCTGTGCAAATACAGATGTGCTAGAAGCCGCTGTTGATTCTGCAATTGACCGATATAGACCAAAGATGATATGGGCTTTTCAGAAAGAAAGAAGGTCAACTTCAGTAGATTGCAGACTCGATTCTCACGATCCTGGTTTGATATCACATTCCCCTGATCTTTCAGATATCTCAGAATCTCCAATATCTCTTGACATCAACCATATAAGTCAAACATCTGAAGAATCACTGTCTCCCGACATTAACATAATAGCCATTGATTCTGGTGTTCCTCGGCGACCCCCTGCTGGAAAACGTGCAAATGATCAGGTTAATTACCCTAAGTTGATTGAGTTGTTACTCAACAGTTCTGAATTTGCCTCAAACCTGATATATGATGTAACTGGAGGGAAATTAGGATGTCCTCCATCAGAAGACATGGACAAAACTGATATATATGCGAACGATGTAATGTCTGTAGTTCATGCGTTCCGCGCTGGTTTCCGCGCTGCTCTCAGGGATCTGCAGGGATTTCACATATTCCTACTCACACTTCACCAAAGACTTGATACCTTGTTACGATCATTTATGAACATTATGAGCAAAATATCTTTGGGAGAATTTGACAAAGAAGATGCTGTAGTTCCTGACTCACCTTCACTAGCAGTTGGTGGGCATTTTTACTCGCCATCATGTAAAGAGAGGCTTGGTAATGATAACCATCATGATTTGATTGATTCAGAACCACAGAGAACTGCTTCAAAAGCATCACCTTCAGGCAACAGAGATTGCAGTGACTTTACTCCTACCCCAAGAGAATCTTGCCATGGAAAGTTCTATAGAGGAAATGGGGAACCACTGCGTAGTCTCCGTTTGACTACTAAGCTCCGTGACTTCCATAAATTTGCCAAGGTTGATGCTGAATCCAGTAGAGAATTGGAACAATGGAATGAAATGCTTAAAAGCGATGCCATCAAACTATGCCAGGATAACAATTTCAATCCAGGATTTTTTGAGGGTAGTGATAATAACTGTGCTGTTGACGCATATGAACTTAAGATACGACTTGAGCATATTATCGAGAGAATTGCATTGATATCAGATGCTGCAAGTACTGAGAAACCTTCAGCAGTGACAAGTAGTCTGTTCATCGGTGGAGCATTGGCTGCAAGATCTGTTTACACACTGCAGTACTTGGGAATCACAAATATTTTGTGTTTGTGTACCAATGAAATTGGACAGTCAGAAACTCAGTATCCTGATCTATTTGAGTATAAGAATTTCTCTGTATGTGATAGTGATGATTACAACATCAGCGGCATATTTGAAGAAGCATGTGATTTGATAGATCATGTTGAACAAACAGGTCAAAAAGTCTTAGTTCACTGCTTTGAGGGGAAAAGCCGAAGTGTTACATTGGTCCTCGCATACTTAATGCTCAGGAAGAAGTATACTTTATTAGAAGCATGGCAAGCTTTGAAGCGAGTTCACTGTCGAGCACAACCCAACGACGGTTTTGCAAAGACCCTATTGGACTTAGATCAGAAACTACATGGAAAGGTTTCGATGGAATGGCATCAGCGAAAACCAATGATGAAAGTTTGCCCAATATGTGGGAAGAATGCTGGGCTAAGCAGTAGCTCACTCAAGCTCCATTTGCAGAAATCACATAGAAAGCTGTCCTCTGGAAGTGTAGATAGCGCCATGACTATGGAAATCGAGAAAGCTTTGACAGCTTTGAAGATTAGCCGTGGAGGGAGTGTCAGCCCCACACAAAGATAA 2901 0.4274 MHVIWELLVQLKTKSFLEESLYKFIGLTSDSDPISLMCKKRALKWFAFIALYRTKMSKKYSGKGQERELELESDESEAEIEAPLPLTVTSRALYMLGDITAGPAFKFTQWLQLVRKRTAKHRPSGFPHRTSITMSSTSCERLEDPKLELHPDQTEIRLWERLGKAAMLDIESSSFSWDMLSSLHHTEHGSSNEQSEDEMNKALEVTVNSGGVVFFAFFNLPGNADIYPKEAAAVIKISPSRMATQSERLGYEFAKWLGVQTPQCRVIHNTSHEWQQIKEAAERAREAANSEGDEIGEVTCFELLEALELSRCLFFMSYVHGSPLLESSTAFKSKESAERTSEALGRVLMLDLVIRNEDRLPCRELRWRGNPANLLLAGKTICANTDVLEAAVDSAIDRYRPKMIWAFQKERRSTSVDCRLDSHDPGLISHSPDLSDISESPISLDINHISQTSEESLSPDINIIAIDSGVPRRPPAGKRANDQVNYPKLIELLLNSSEFASNLIYDVTGGKLGCPPSEDMDKTDIYANDVMSVVHAFRAGFRAALRDLQGFHIFLLTLHQRLDTLLRSFMNIMSKISLGEFDKEDAVVPDSPSLAVGGHFYSPSCKERLGNDNHHDLIDSEPQRTASKASPSGNRDCSDFTPTPRESCHGKFYRGNGEPLRSLRLTTKLRDFHKFAKVDAESSRELEQWNEMLKSDAIKLCQDNNFNPGFFEGSDNNCAVDAYELKIRLEHIIERIALISDAASTEKPSAVTSSLFIGGALAARSVYTLQYLGITNILCLCTNEIGQSETQYPDLFEYKNFSVCDSDDYNISGIFEEACDLIDHVEQTGQKVLVHCFEGKSRSVTLVLAYLMLRKKYTLLEAWQALKRVHCRAQPNDGFAKTLLDLDQKLHGKVSMEWHQRKPMMKVCPICGKNAGLSSSSLKLHLQKSHRKLSSGSVDSAMTMEIEKALTALKISRGGSVSPTQR 966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03761 966 Gene3D - 322 427 IPR036940 -
Vian1g03761 966 FunFam Dual specificity protein phosphatase PHS1 719 893 - -
Vian1g03761 966 MobiDBLite consensus disorder prediction 623 641 - -
Vian1g03761 966 ProSiteProfiles Dual specificity protein phosphatase domain profile. 747 892 IPR020422 GO:0006470|GO:0008138
Vian1g03761 966 Coils Coil 271 291 - -
Vian1g03761 966 Gene3D Protein tyrosine phosphatase superfamily 725 893 IPR029021 -
Vian1g03761 966 MobiDBLite consensus disorder prediction 611 642 - -
Vian1g03761 966 Pfam Dual specificity phosphatase, catalytic domain 768 888 IPR000340 GO:0008138|GO:0016311
Vian1g03761 966 Pfam Actin-fragmin kinase, catalytic 155 469 IPR015275 -
Vian1g03761 966 SMART dsp_5 747 889 IPR020422 GO:0006470|GO:0008138
Vian1g03761 966 CDD DSP 748 885 - -
Vian1g03761 966 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 816 868 IPR000387 GO:0016311|GO:0016791
Vian1g03761 966 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE PHS1 73 966 IPR035010 GO:0004721|GO:0009737|GO:0043622
Vian1g03761 966 SUPERFAMILY Protein kinase-like (PK-like) 109 483 IPR011009 -
Vian1g03761 966 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 747 892 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03761 Vian-Chr1 60537858 60545614 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03761 63 958 Protein tyrosine phosphatase (PTP) family AT5G23720 62.472 0.0 1102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03761 K14165 - gmx:100791993 1539.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03761 1 60537858 60545614 Vian1g03761 1 60537858 60545614 ECH