Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03758 ATGATGTCTGGTTGGATGCAAGAGACAGAAGAACAAAACTGTGCTTCATGGTCAAACCCAAACGCCAACGAGCTAAGCTGCTTCTACAAACCCATCTCCGACATCCATGAAGAATGGCACGTGCCCAACAGCACCACCCAGATTCACTCACATGTTACAGACACGGCTTTCTCCACCAACTTCGCTCATAACATGTTACTCCATCAACACCAACCATTACACACTTTCTCTTCTTCCACCAGCCTTGACCTATCTCAAGGGCACAACTTCTTCACCCCCAAACCCTTCTTTTACCCGTTGGATCACGCCTTTCGCGCGGGTTCCGATGTGGGGTTTCTTGATCCTCATGCTTTGAACAAGGTTCATCATGGTGGTGTCTTCTCCAGCTCAAATGATAATAACCAGTTCGCCCTTCCAAATTTAGCAACCCTATGTGCAATGCCTCCCCAACAAGACGGTGTTGGATTTCCCGGATTCAAGAATATCGTTGACTCTGATCATGTGGAGGGTTCAAGAAAGGCCTTGCTTCTGAGCACGTCCAACGTACTGAAACCCCTTGAATCGTTCCCTCCATCAGGTGTGCAACCAACACTTTTTCAGAAGCGAGCAGCACTGAGGAAAAGCATGGAAGATAACTGCAAAGGCAAGAGTAAAGGGAATAGCGATAGTAGCAAGAGGAAGACTTGTAATAATGGAGAAGGTGATGAAGGGTCCGGGTTGAATCTTGATTCTGATGAGAGTGGTGAGATGGAAGAGAGTGGAAGGAACGGCGGAAACAGCTCGAATGCGAATAGCACCGTCACTGGCGGCGTGGATCAAAAGGGCAAGAAGAAGACAGGGATACCTGCGAAGAATTTGATGGCCGAACGCCGCCGAAGAAAGAAGCTCAATGACAGACTCTACATGCTGAGATCAGTTGTTCCCAATATCAGCAAAATGGACAGAGCATCAATACTGGGGGATGCAGTAGAGTATTTGAAGGAACTTCTGCAAAGGATTGGTGACCTTCACAATGAATTGGAGTCAACAACACCAGCTGGTTCTTCATTGACTTCAAGCTTTCTTCATCCCTTGACGCCCAAATTACCAACAAGTATGCAAGAAGAACTTTCTCTCAGCTCATTGCCAAGCCCTAATGGCCAACCTGTGAGGGTTGATGTTGGGTTGAGTGAAGGAGGTGTAAAGATTCAGATGTGTTGTGAGAGGAAACCTGGTCTCTTGCTGTGTACCATGAGGGCTCTCGACAACCTTGGCATAGACATCCACCAAGCTGTCATCACCTATTTCAATGGATTTTCCATGGATATTCTCCGAGCTCAGATATGTAGCGAAGGTCAAGATGTTCATCCAGAGCAAATCAAAGCAGTTCTATTAGATTCGGCTGGCTACCATGGCATGATCTAG 1404 0.4701 MMSGWMQETEEQNCASWSNPNANELSCFYKPISDIHEEWHVPNSTTQIHSHVTDTAFSTNFAHNMLLHQHQPLHTFSSSTSLDLSQGHNFFTPKPFFYPLDHAFRAGSDVGFLDPHALNKVHHGGVFSSSNDNNQFALPNLATLCAMPPQQDGVGFPGFKNIVDSDHVEGSRKALLLSTSNVLKPLESFPPSGVQPTLFQKRAALRKSMEDNCKGKSKGNSDSSKRKTCNNGEGDEGSGLNLDSDESGEMEESGRNGGNSSNANSTVTGGVDQKGKKKTGIPAKNLMAERRRRKKLNDRLYMLRSVVPNISKMDRASILGDAVEYLKELLQRIGDLHNELESTTPAGSSLTSSFLHPLTPKLPTSMQEELSLSSLPSPNGQPVRVDVGLSEGGVKIQMCCERKPGLLLCTMRALDNLGIDIHQAVITYFNGFSMDILRAQICSEGQDVHPEQIKAVLLDSAGYHGMI 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03758 467 CDD ACT_UUR-ACR-like 396 456 - -
Vian1g03758 467 CDD bHLH_AtAMS_like 283 354 - -
Vian1g03758 467 SMART finulus 286 335 IPR011598 GO:0046983
Vian1g03758 467 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 280 329 IPR011598 GO:0046983
Vian1g03758 467 Gene3D - 272 344 IPR036638 GO:0046983
Vian1g03758 467 MobiDBLite consensus disorder prediction 253 272 - -
Vian1g03758 467 Pfam Helix-loop-helix DNA-binding domain 287 329 IPR011598 GO:0046983
Vian1g03758 467 FunFam BHLH transcription factor 275 344 - -
Vian1g03758 467 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 157 463 - -
Vian1g03758 467 MobiDBLite consensus disorder prediction 208 281 - -
Vian1g03758 467 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 284 349 IPR036638 GO:0046983
Vian1g03758 467 MobiDBLite consensus disorder prediction 208 232 - -
Vian1g03758 467 SUPERFAMILY ACT-like 392 466 IPR045865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03758 Vian-Chr1 60512349 60515411 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03758 99 446 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 48.947 5.67e-87 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian1g03758 HLH 9.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03758 - - var:108344591 899.042