Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03757 ATGGCGTCGTCGGAGGTATCGATCAAGGGAAATTCGGTGAACGGTAAAGCAGAGAACAGTTCCGGTGGCTTCAACGGCTGCAACGATGTTAGGAACGCTGGAGGAGAGCTTCAGAATGCTTCTTCCTCATCATCCGCCAGAGACGCGGAAACAGCGCTTTACAGGGAGCTATGGCACGCGTGCGCGGGTCCGCTGGTGACGGTGCCTAGAGAAGGAGAGCGCGTGTTCTACTTTCCTCAAGGACATATTGAGCAGGTAGTTCAGATGCGGCGCTACTCGGCGGAGTTCCGCTTCTGGCGCTGTCTCTCGCAAGCGGACTTGGTTTCTACAGTGAAATTTGGTGTACTTGTGTTTTCTATATTTGGTTTTGAACACGAGTGTTTGTTTTTATGGCGCACACGCACATTAGGTGGAAGCGTCGACAAATCAGGTAGCGGAACAGCATATGCCGGTTTACGATCTACCACCGAAGATCCTTTGTCGGGTCATCAACGTCATGCTCAAGTTTCTGGGTATGGAGTAATTCCGCAACGCCGTCGTCCTTATGTTTCTTTGTGGATCTGGATGATAGCAAGACGAGAATGCGGTGGAGAAGGAGGGTCCTCCGGCACCGCCTCCCCGGTTTCACGTCCATTCGTTTTGACTAGTCCAGCCGAATTTATAGTTCCGTATGATCAATACATGGAGTCACTAAAAAACAATTACACCATCGGGATGCGCTTCAAAATGAGGTTTGAAGGTGAAGAGGCTCCCGAGCAAAGGTTTACCGGTACCATTGTGGGAATAGAAGATGCTGATCAAAAAAGGTGGCCTAACTCCAAATGGAGAAGCCTTAAGGTGAGGTGGGATGAAACTTCTAACGTACCTCGTCCTGAGAGAGTTTCCCAATGGAAAATAGAGCCCGCTCTCGCTCCTCCTGCTCTTAACCCTTTACCAATGCCCAGGCCTAAAAGGCCTCGATCTAATGTGGTTCCATCATCCCCTGATTCCTCTGTTCTTACCCGTGAAGCATCATCTAAAGTGAGTGTGGACCCTTTGCCAGCAAGTGGATTCCAAAGGGTCTTGCAAGGTCAAGAATTATCGACCTTGAGAGTAAATTTTGCCGAAAGCAATGAATCTGATACGGCAGAGAAGTCTGCATGGTCATCTGCTGCAGACGATGAAAAGATTGATGTTGTTTCCACCTCTAGAAGGTATGGATCAGAGAGCTGGATGTCAATGGGAAGGCACGAACCAACTTATCCAGATCTGCTTTCTGGCTTTGGGGTTCATGGAGATCAGGCTTCCCATCCATCGTTGGTTGATCAAAATGGTCCTGTAGCTAACCTTAGTAGAAAACATTTTTTCGACCGCGAAGGCAAACATAATGTTCTTAGTCCTTGGCCTGTAGTGCCATCTAGTCTATCACTCAATCTATTGGACTCTAATACAAAAGTCTCTGCTCAAGGTGGTGATCAAGTTCGAGGGAATTTGAGATTTAGCAGTGCATTTGGTGACTATACTGTGCTTCATGGACACAAAGTTGATCATTCGCACGGAAACTTTTTGATGCCACCACCACTGTCAACTCAATATGAGAGCCCTCGTTCTAGAGAACTGTTACCCAAACCAATATCAGGAAAACCTTCTGAGGTATCAAAACCGAAGGACAGTGACTGTAAGCTATTTGGCATCTCACTTCTTAGTAGCCCCATTGCTCTGGACCCTTCTGTATTACAAAGAAATGTTGCAATCGAGCCAGTTGGTCACATGCATACCACACATCAACAGCGCACATATGAAAATGACCCAAAGTCTGAGAATTCAAGGGGATCGAAACCGGCTGATGGTGTGCTGATTGACGACCATGAAAAGCCTGCACAAACTTCTCAGCCACAGCTGAAAGATGTTCAACCCAAATCTAATGGTGGTTCTGCTAGAAGTTGCACTAAAGTTCACAAGAAAGGGATTGCACTTGGTAGGTCGGTGGACCTCACAAAATTCAGTGCATATGATGAATTAATTGCTGAATTGGATGAGCTATTTGAATTCGGAGGTGAATTAACCTCTCCCCAAAAAGATTGGCTTATTGTCTACACTGATAATGAGGGCGATATGATGCTTGTTGGTGATGATCCTTGGCAGGAATTTGTTGCTATGGTACGAAAAATTTATATCTATCCCAAAGAGGAGATTCAGAAAATGAGCCCGGGTACCTTAAGTTCAAGGAACGAAGAGAATCAATCGGCTAGTGAAGGTGCGGACGCTCAACAAGAAAATAAATGTCAGCTGAATCATTCAGCTTCAGAGGCCTGA 2295 0.4641 MASSEVSIKGNSVNGKAENSSGGFNGCNDVRNAGGELQNASSSSSARDAETALYRELWHACAGPLVTVPREGERVFYFPQGHIEQVVQMRRYSAEFRFWRCLSQADLVSTVKFGVLVFSIFGFEHECLFLWRTRTLGGSVDKSGSGTAYAGLRSTTEDPLSGHQRHAQVSGYGVIPQRRRPYVSLWIWMIARRECGGEGGSSGTASPVSRPFVLTSPAEFIVPYDQYMESLKNNYTIGMRFKMRFEGEEAPEQRFTGTIVGIEDADQKRWPNSKWRSLKVRWDETSNVPRPERVSQWKIEPALAPPALNPLPMPRPKRPRSNVVPSSPDSSVLTREASSKVSVDPLPASGFQRVLQGQELSTLRVNFAESNESDTAEKSAWSSAADDEKIDVVSTSRRYGSESWMSMGRHEPTYPDLLSGFGVHGDQASHPSLVDQNGPVANLSRKHFFDREGKHNVLSPWPVVPSSLSLNLLDSNTKVSAQGGDQVRGNLRFSSAFGDYTVLHGHKVDHSHGNFLMPPPLSTQYESPRSRELLPKPISGKPSEVSKPKDSDCKLFGISLLSSPIALDPSVLQRNVAIEPVGHMHTTHQQRTYENDPKSENSRGSKPADGVLIDDHEKPAQTSQPQLKDVQPKSNGGSARSCTKVHKKGIALGRSVDLTKFSAYDELIAELDELFEFGGELTSPQKDWLIVYTDNEGDMMLVGDDPWQEFVAMVRKIYIYPKEEIQKMSPGTLSSRNEENQSASEGADAQQENKCQLNHSASEA 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03757 764 SUPERFAMILY CAD & PB1 domains 641 717 - -
Vian1g03757 764 MobiDBLite consensus disorder prediction 589 616 - -
Vian1g03757 764 Gene3D - 234 304 - -
Vian1g03757 764 ProSiteProfiles PB1 domain profile. 640 722 IPR000270 GO:0005515
Vian1g03757 764 MobiDBLite consensus disorder prediction 582 644 - -
Vian1g03757 764 FunFam Auxin response factor 635 729 - -
Vian1g03757 764 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 51 91 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vian1g03757 764 FunFam Auxin response factor 234 306 - -
Vian1g03757 764 Gene3D - 636 729 - -
Vian1g03757 764 MobiDBLite consensus disorder prediction 514 550 - -
Vian1g03757 764 Pfam Auxin response factor 215 279 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vian1g03757 764 MobiDBLite consensus disorder prediction 323 338 - -
Vian1g03757 764 MobiDBLite consensus disorder prediction 619 641 - -
Vian1g03757 764 MobiDBLite consensus disorder prediction 305 321 - -
Vian1g03757 764 MobiDBLite consensus disorder prediction 304 344 - -
Vian1g03757 764 MobiDBLite consensus disorder prediction 728 764 - -
Vian1g03757 764 Pfam AUX/IAA family 625 728 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03757 Vian-Chr1 60506882 60510786 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03757 1 95 B3 DNA Binding Superfamily AT5G62000 57.843 3.63e-23 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03757 - - gmx:100815956 897.886